PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_C4568AE60.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28519.2 Da PI: 7.1816 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 24 | 58 | 2 | 37 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK 37 + ++erE+r R N+ f+eL +l ++ +++++K Traes_2AS_C4568AE60.1 24 KIHKSEREKRKRGTQNDLFNELGAMLEPD-RQNNGK 58 66789*********************996.244443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.074 | 22 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-10 | 22 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-7 | 23 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MVNHRKDKTA PSVVNRKCEK VPKKIHKSER EKRKRGTQND LFNELGAMLE PDRQNNGKAC 60 VLGDTTRILK DLVSQVESLR KENSTLKNES HYVVLERNEL RDDNSMLRNE ILELQNKLRM 120 RLQSNPIWSQ DTTTRSAVAV PYPTSGVFPV QHSPHSPVIT STALSLHPVI TEQCYAAPPR 180 ELQLFPEASS ASTEDSELSQ DQGISNSVTP PQARYPTPAV MSPVNEFPIL PRMGEEQQYS 240 SGTSEEIHTQ MCM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367953 | 0.0 | AK367953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065H09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168705.1 | 1e-165 | transcription factor bHLH47-like | ||||
Swissprot | Q69V10 | 1e-110 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A446KR17 | 0.0 | A0A446KR17_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AS_C4568AE60.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 6e-29 | bHLH family protein |
Publications ? help Back to Top | |||
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