PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_BB6B8AC48.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 508aa MW: 59285 Da PI: 8.2432 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.3 | 5.9e-24 | 17 | 105 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 f+ Y+ ++GF+vr+++++ksk +g it++++vCs+eg+r+ +k++ ++++r+raetrtgCk ++ ++ ++ +g++ev++l++eHnH Traes_2AS_BB6B8AC48.2 17 FWTCYGGHIGFDVRVNYENKSKLDGAITSARYVCSNEGYRRIDKRD-HNTKRPRAETRTGCKVRMGITIDReTGNYEVHELVTEHNHV 103 999****************************************999.99*******************9999***************9 PP FAR1 89 la 90 l+ Traes_2AS_BB6B8AC48.2 104 LQ 105 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.4E-19 | 17 | 104 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-23 | 227 | 321 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MPQIGMKFNS TKEAWGFWTC YGGHIGFDVR VNYENKSKLD GAITSARYVC SNEGYRRIDK 60 RDHNTKRPRA ETRTGCKVRM GITIDRETGN YEVHELVTEH NHVLQLPGTC HLMPSQRKIS 120 TLQAFDIETA DDSGIVPKAA HELASRQVGG SSSLTYTPRD HKNYLRTKRQ RELIYGEAGS 180 MLKYFRDKKN ENPAFEYDVQ HDCNEQIANI FWADAKMIID YAHFGDVVTF DTTFGTNKEY 240 RPFGVFVGFN HFREMVIFGA ALLYDETFES FRWLFNTFLS IHNKKQPRTI FTNQDVAMGN 300 AIRAVFTEAW HGLCTFHRMQ NAIKHLPHKK KDEDGPNVLA DFSACMYKYE EEEDFEEAFT 360 AIRINVDTQT WLDSIYKVKE KWARCYMRNA YTIGMRSTQL SESLNSDLKD HLKSDLDILC 420 FFKNVERVVK GKRDKEVNEE YESRKKLPRV RIRTPTVIQA SKVYTPHIFE DFQNEYERSI 480 FRMNMKDPSQ RTSSHRGTQC IYCCNCQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876513.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | T1NX16 | 0.0 | T1NX16_TRIUA; Uncharacterized protein | ||||
STRING | Traes_2AS_BB6B8AC48.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 9e-84 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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