PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_A117C8692.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HB-other | ||||||||
Protein Properties | Length: 233aa MW: 26576.4 Da PI: 10.3694 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.8 | 5.2e-15 | 35 | 87 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++ Traes_2AS_A117C8692.2 35 TKKSPLQIQMLESFYSEVQYPKPEDVTEYAASVGLTYNQVRIWFKERRRKERR 87 566899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.398 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.2E-14 | 30 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-15 | 30 | 95 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-15 | 35 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.04E-8 | 35 | 78 | No hit | No description |
Pfam | PF00046 | 2.3E-12 | 36 | 87 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MVFTVTCLLC ALIPNYGFLQ MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDV 60 TEYAASVGLT YNQVRIWFKE RRRKERRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS 120 PMQDTTGHQS YQDQSVLKKR KIMSPTAQRS TLPFENNDPV RKHGKGKGLM TVWHAMYSQT 180 AEIQDCSSFI DESGCLRSLR PFEDCGGKLA QRQTLPRKKV NKKSRPPPSK RKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373981 | 0.0 | AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187489.1 | 1e-147 | homeobox-DDT domain protein RLT3-like | ||||
TrEMBL | A0A446KNL2 | 1e-164 | A0A446KNL2_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AS_A117C8692.2 | 1e-177 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4556 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 3e-09 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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