PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_9AEA9BDEA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 36657.1 Da PI: 6.5851 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00011 | 109 | 154 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + erE+ Rd +N+ f+eL e+l + + + Ka iL+ +++ +++L Traes_2AS_9AEA9BDEA.1 109 KAEREKHKRDLLNDLFSELDEMLEAD----RQTNGKACILTDTTRILRDL 154 579********************997....57788888998888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.24E-10 | 102 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.439 | 104 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-7 | 109 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MAHASSPRHR PRNGTGTPRA PPPLFFFFFF STLRHCANQG QRSQAAATPF LQSPSIRDVC 60 GAGQGMVAML PAARGDAAPA ASAGAADKLV HGPVTDGKCK KKAPRMIHKA EREKHKRDLL 120 NDLFSELDEM LEADRQTNGK ACILTDTTRI LRDLLSQLES LRKENSTLQN ESHYVTMERN 180 ELQDENGVLR NEILELQNEL ATLPAGNPGW GHATAGSPHP AGTVFPSQQP MQPTTIASAV 240 FPLQQPLQQT TILEHPYAPP PPPRELKLFP DAASDIEGLE PSEDQEAANH IARPLARYPT 300 QSALWPVSLG LPRMEDEQCS SGTTGSSKEG SSSASSRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ534275 | 0.0 | KJ534275.1 Triticum aestivum isolate Ta_IRO3_2 putative transcription factor bHLH mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175951.1 | 1e-142 | transcription factor bHLH47-like | ||||
Swissprot | Q69V10 | 9e-80 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A3B6ASR6 | 0.0 | A0A3B6ASR6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AS_9AEA9BDEA.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 4e-23 | bHLH family protein |
Publications ? help Back to Top | |||
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