PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_9A3F73BE3.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 302aa    MW: 33030.5 Da    PI: 4.5769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_9A3F73BE3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-112262661055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++ +L+ l+P+      +K++ +++Le+AveY+k +q
  Traes_2AS_9A3F73BE3.1 226 RKRRERINERLKTLQNLVPNG-----TKVDISTMLEEAVEYVKFMQ 266
                            9******************97.....8****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.205216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-14217281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-13221276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-12225270No hitNo description
PfamPF000101.1E-8226266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESSYSSAMP METDTMSQFL GGDHHCFAYE QQDESMEAMA AMFLPALDTD SNSSSSCLNY  60
EVSPQCWPQP QPQPGHSSSV TSFLDPGHGY ESFEFPVMDP FPHSEFQSHC TDIPYLGGGG  120
EDLSPLDSNC APAAGEEAAN DHIPVTNKRK SRAATTASKK AKKAGKKDFT SNDIEGDDTY  180
VIDPQSSSSC TSEDGDLDGN TKSSSKKTGT RASRGAATDP QSLYARKRRE RINERLKTLQ  240
NLVPNGTKVD ISTMLEEAVE YVKFMQLQIK LLSSDDMWMY APLAYNGINV SSLEMHIAAL  300
QK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153858.10.0transcription factor bHLH69-like
SwissprotQ84WK03e-48BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A446KTQ60.0A0A446KTQ6_TRITD; Uncharacterized protein
TrEMBLW5B3E40.0W5B3E4_WHEAT; RSL4-2AS
STRINGTraes_2AS_9A3F73BE3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.13e-50root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  4. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]