PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_87EF37490.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 275aa    MW: 30615 Da    PI: 6.9007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_87EF37490.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-08223271146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                            r++WT+  +  l+++v ++G+g+Wk I    +   + R+  + k+++++
  Traes_2AS_87EF37490.1 223 RKKWTEIQERTLIEGVDKYGKGNWKDIKIAYPdvfQDRSTVDMKDKFRN 271
                            789*******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.749218275IPR017930Myb domain
SuperFamilySSF466892.47E-12221272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-9221272IPR009057Homeodomain-like
SMARTSM007171.3E-4222275IPR001005SANT/Myb domain
PfamPF002491.9E-7223271IPR001005SANT/Myb domain
CDDcd116601.40E-17224272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
AVVRDDVAAL RRLVDAEWES LPPSELELEA DRIAGAGALD TWANADQDTR KKLRRLVGES  60
TAREILGKLG QDPSKAPQVD EAANAPSTSG VNEGDRAQQD DEAHLGMGKG EASLAQEDCA  120
RHQQEPVERT TDARIPEKLV TSAATKGKEQ ATSSHVTGQA APDHNKSHPV TGPKPSLMER  180
KPSAIVYQWD SGDSDSERPP HQRRLPNYER RMRPPPAVPY KTRKKWTEIQ ERTLIEGVDK  240
YGKGNWKDIK IAYPDVFQDR STVDMKDKFR NMGRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158353.11e-176uncharacterized protein LOC109743674
TrEMBLA0A3B6ASC60.0A0A3B6ASC6_WHEAT; Uncharacterized protein
STRINGTraes_2AS_87EF37490.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-10TRF-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]