PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_83423E255.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 295aa    MW: 32748.4 Da    PI: 10.3543
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_83423E255.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS226.51.3e-697629476302
                   GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                               +a+++++ +sP++kfsh+taN+aIl+a++ge++vH+iD+di+qGlQWp L++ LasRp+ p slR+Tg+g+    s + le+tg+
  Traes_2AS_83423E255.1  76 XXSSAFQAYNALSPLVKFSHFTANKAILQALDGEDHVHVIDLDIMQGLQWPGLFHMLASRPRRPLSLRVTGLGA----SLDVLEATGR 159
                            567899********************************************************************....9********* PP

                   GRAS 164 rLakfAeelgvpfefnvlvakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                            rLa+fA++lg+pfef+++  k  +  ++ +L   r +++Ea++V++++  h l+d ++s       +++l+ksl+Pk++++veq++ h
  Traes_2AS_83423E255.1 160 RLADFAASLGLPFEFQPIDGKIGHVADTTALlgpRHRHREATVVHWMH--HCLYDVTGSDVG----TVRLLKSLRPKLITIVEQDLGH 241
                            *****************855544555666664556666*********9..889988999998....********************** PP

                   GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                             s++Fl rf+eal+yysalfd+l  ++++++eer+ vEr+llg ei+n+va  g
  Traes_2AS_83423E255.1 242 -SGDFLGRFVEALHYYSALFDALRDGAGAAEEERHAVERQLLGAEIRNIVAVGG 294
                            .899*******************9999***********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.8091295IPR005202Transcription factor GRAS
PfamPF035144.4E-6776294IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
GCCSGARRRW PWTSSRRRRT CCRRSPSWRP RSGPPRSASR PTSATRCARA CSARTWAXXX  60
XXXXXXXXXX XXXXXXXSSA FQAYNALSPL VKFSHFTANK AILQALDGED HVHVIDLDIM  120
QGLQWPGLFH MLASRPRRPL SLRVTGLGAS LDVLEATGRR LADFAASLGL PFEFQPIDGK  180
IGHVADTTAL LGPRHRHREA TVVHWMHHCL YDVTGSDVGT VRLLKSLRPK LITIVEQDLG  240
HSGDFLGRFV EALHYYSALF DALRDGAGAA EEERHAVERQ LLGAEIRNIV AVGGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-967929596308Protein SCARECROW
5b3h_D5e-967929596308Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201400.0AK120140.1 Oryza sativa Japonica Group cDNA clone:J013027P17, full insert sequence.
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.11e-154scarecrow-like protein 23 isoform X1
RefseqXP_020200233.11e-154scarecrow-like protein 23 isoform X2
SwissprotQ9FHZ13e-96SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A3B6AVJ11e-153A0A3B6AVJ1_WHEAT; Uncharacterized protein
TrEMBLA0A446KTW51e-153A0A446KTW5_TRITD; Uncharacterized protein
TrEMBLA0A446M4C31e-155A0A446M4C3_TRITD; Uncharacterized protein
STRINGTraes_2AS_83423E255.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.17e-92GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]