PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_7BD3963BD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 553aa    MW: 61411.4 Da    PI: 6.5919
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_7BD3963BD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.85.2e-1321835521373
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l+elLl+cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e +   ss+ l+++++++e++
  Traes_2AS_7BD3963BD.1 183 LKELLLACARAVEEKNMYAVDVMVPELRKMVSVSGTPLERLGAYMVEGLVARLASSGHSIYKALRCKEPK---SSDLLSYMHFLYEAC 267
                            5799*****************************************************************9...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++kf+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+g p++RiTg+++  s   +   l  +g+rL+++A  ++v
  Traes_2AS_7BD3963BD.1 268 PYFKFGYMSANGAIAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGXPTVRITGIDDTVSAyaRGGGLDLVGRRLSHIAGLCKV 355
                            *************************************************************888899999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfef+  va + e++e  +L + pgEalaVn+ l+lh+++de+vs++++rd++L+lvk+l+P+v+++veqe+++n+++F +rf+e+l+
  Traes_2AS_7BD3963BD.1 356 PFEFHS-VAMAGEEVEEAHLGFVPGEALAVNFTLELHHIPDETVSTANHRDRILRLVKGLRPRVLTLVEQESNTNTAPFPQRFAETLD 442
                            ******.7999***************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yy+a+f+s++ +lpr+++er+++E+++l+re+vn++acegaer+erhe ++kW++rl++aGF+p pls  +++++++ll+ ++++ y+
  Traes_2AS_7BD3963BD.1 443 YYAAIFESIDLTLPRDDRERVNMEQHCLAREVVNLIACEGAERVERHEVFGKWKARLTMAGFRPSPLSALVNATISTLLQSYSEN-YK 529
                            ***********************************************************************************55.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                            + e++g+l+lgWk++pLv+ SaW
  Traes_2AS_7BD3963BD.1 530 LAERDGALYLGWKSKPLVVSSAW 552
                            *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.715157534IPR005202Transcription factor GRAS
PfamPF035141.8E-129183552IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MADTPTSRMI HPFSNMQRQN PKQFQFQYSD NPQHPCRPYQ PSPDTHVVPQ HLYSLKSSSD  60
ASYENQVAQM KHTLDSSAAA GCMRHDSPSS HSFTPPSIRS GXXXXXXXXS RSDSTNGSPV  120
SASCVTVTTE DPNDLKQKLK DLEAEMLGPD AEIVNSLESS VAKQLSLEPE KWAQRMDFPR  180
GDLKELLLAC ARAVEEKNMY AVDVMVPELR KMVSVSGTPL ERLGAYMVEG LVARLASSGH  240
SIYKALRCKE PKSSDLLSYM HFLYEACPYF KFGYMSANGA IAEAVKGEDR IHIIDFHIAQ  300
GAQWISLLQA LAARPGGXPT VRITGIDDTV SAYARGGGLD LVGRRLSHIA GLCKVPFEFH  360
SVAMAGEEVE EAHLGFVPGE ALAVNFTLEL HHIPDETVST ANHRDRILRL VKGLRPRVLT  420
LVEQESNTNT APFPQRFAET LDYYAAIFES IDLTLPRDDR ERVNMEQHCL AREVVNLIAC  480
EGAERVERHE VFGKWKARLT MAGFRPSPLS ALVNATISTL LQSYSENYKL AERDGALYLG  540
WKSKPLVVSS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-631875538375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641790.0AK364179.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176499.10.0chitin-inducible gibberellin-responsive protein 2-like
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A3B6AW050.0A0A3B6AW05_WHEAT; Uncharacterized protein
TrEMBLA0A446KT410.0A0A446KT41_TRITD; Uncharacterized protein
STRINGTraes_2AS_7BD3963BD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]