PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AS_7597E2C66.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 255aa MW: 30564.3 Da PI: 10.2441

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_7597E2C66.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.9e-07	38	58	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++ G+C++ ++C+F+H+ Traes_2AS_7597E2C66.2 38 VCYAFQK-GECSRVASCRFSHD 58 699**.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.037	33	60	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.0E-5	38	58	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVIFQRNANT GWGSKEDDPK WEHDRHRGPQ NKGESRGVCY AFQKGECSRV ASCRFSHDEQ 60 RNANTDRGSR EDSNARRQHD HDPPKSHKNF PDRTKEEARS GDRDGQSSRS ELYRDRDSRT 120 RYGDRDTKDR DRNMQEKSPE RSRGDRQRGD DRGREDRSDT KDRDRNGHEK SPERSRGDRQ 180 RGDDRGREDR SDVKDRDRNG YEKSPERPRG DRQRGDDRRR EDRSESKRSR HDRDSGVRYE 240 RRGDEEEERY RKSRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372818	0.0	AK372818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013K18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159671.1	1e-133	zinc finger CCCH domain-containing protein 25-like
Swissprot	Q10B98	5e-48	C3H25_ORYSJ; Zinc finger CCCH domain-containing protein 25
TrEMBL	A0A446KPY3	1e-169	A0A446KPY3_TRITD; Uncharacterized protein
STRING	Traes_2AS_7597E2C66.2	1e-173	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5918	3	3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]