PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AS_70DFD1AE1.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 894aa MW: 101384 Da PI: 7.1451

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_70DFD1AE1.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85	1.1e-26	111	198	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +gk+++t+++ +HnH+ Traes_2AS_70DFD1AE1.2 111 EFYNIYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KESKCPRPETRIGCPASMTIRLTPNGKYRLTEFVPNHNHQ 196 6******************97766.************9999.9999********************************** PP FAR1 89 la 90 la Traes_2AS_70DFD1AE1.2 197 LA 198 97 PP
2	FAR1	82	1e-25	240	326	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA ++GF+vr+++++ + ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH Traes_2AS_70DFD1AE1.2 240 EFYSMYAGKIGFNVRRASMTIN-AENVITRRMFVCSKEGFREKKRGA-NRVKKPRPETRTGCPACMVIRLASNGKYNVTEFVTFHNHG 325 6***************9999.5556************9998.9************************************9 PP FAR1 89 l 89 l Traes_2AS_70DFD1AE1.2 326 L 326 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-24	111	198	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	9.1E-22	240	326	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-22	442	536	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.892	710	757	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.3E-9	710	756	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-6	732	759	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MSSNSGGGAK EKGPRIAMPP VPPPLVQNSM PTASDAPTTD LRLAQQSWPG HVVLRPCTSW 60 PPHVNPAYPQ QNGEAVADVV AADVLPVINS CNEKMLPEVN MLFDDENDAY EFYNIYAEKV 120 GFFVRRSTLW TTSKNIITRR TFVCSREGFR EKKKGAKESK CPRPETRIGC PASMTIRLTP 180 NGKYRLTEFV PNHNHQLATA STIHMLKAKK IRRKARAVRE NLVDDTVVTP EFENEDEAYE 240 FYSMYAGKIG FNVRRASMTI NAENVITRRM FVCSKEGFRE KKRGANRVKK PRPETRTGCP 300 ACMVIRLASN GKYNVTEFVT FHNHGLGAAA ASDLVMTSLA AGSYQDCGVD LYDESLDDCY 360 GKQNLIKEDA TSNCLEGRSW KRYKCKVPHY GDVGATLEYL QKMQHDNPSF FYAVKSDEDG 420 NLTNFLWADS KSIMDFTHFG DVVCLDSGYA VQGYGRPIAL FTGLNHHRQT VIFGTALLYD 480 ESFEAFRWLL DTFKMAMNST HPKTLLTDRS AVISEAVAVS WPETAHRFCV WQIYQNALQQ 540 LSQAFHGSRT LEYNFKRCLF DCEDEAEFLM AWREMLENHD LKDNQWLADL LAVKEKWALP 600 YGREAFYADM KSVQQKDNLS SELKIYLSLE FDLLSFFVQF EKLLCDRRSA ELQLDVSASQ 660 STKKPPSMRI LRQAANVYTP AAYRMFEREF ELYMDCMLYN CGEMGTICEY RITVEDNPKD 720 HFVKYDSLNS MSHCSCKRFE FVGIPCRHML KVLDTRNIKD IPPQYILKRW RKDARSGSSN 780 GGYAYSFDGD PQTKRHTLLC RIFSIAAARA ATSAESFAYM ESQSSILMGQ VEQFLENSPP 840 DIAAIIGANC DRTQIPVESM ITDGLHNHAN FINGSADDSL TFPFTMGAGT LDYR

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MSSNSGGGAK EKGPRIAMPP VPPPLVQNSM PTASDAPTTD LRLAQQSWPG HVVLRPCTSW  60
PPHVNPAYPQ QNGEAVADVV AADVLPVINS CNEKMLPEVN MLFDDENDAY EFYNIYAEKV  120
GFFVRRSTLW TTSKNIITRR TFVCSREGFR EKKKGAKESK CPRPETRIGC PASMTIRLTP  180
NGKYRLTEFV PNHNHQLATA STIHMLKAKK IRRKARAVRE NLVDDTVVTP EFENEDEAYE  240
FYSMYAGKIG FNVRRASMTI NAENVITRRM FVCSKEGFRE KKRGANRVKK PRPETRTGCP  300
ACMVIRLASN GKYNVTEFVT FHNHGLGAAA ASDLVMTSLA AGSYQDCGVD LYDESLDDCY  360
GKQNLIKEDA TSNCLEGRSW KRYKCKVPHY GDVGATLEYL QKMQHDNPSF FYAVKSDEDG  420
NLTNFLWADS KSIMDFTHFG DVVCLDSGYA VQGYGRPIAL FTGLNHHRQT VIFGTALLYD  480
ESFEAFRWLL DTFKMAMNST HPKTLLTDRS AVISEAVAVS WPETAHRFCV WQIYQNALQQ  540
LSQAFHGSRT LEYNFKRCLF DCEDEAEFLM AWREMLENHD LKDNQWLADL LAVKEKWALP  600
YGREAFYADM KSVQQKDNLS SELKIYLSLE FDLLSFFVQF EKLLCDRRSA ELQLDVSASQ  660
STKKPPSMRI LRQAANVYTP AAYRMFEREF ELYMDCMLYN CGEMGTICEY RITVEDNPKD  720
HFVKYDSLNS MSHCSCKRFE FVGIPCRHML KVLDTRNIKD IPPQYILKRW RKDARSGSSN  780
GGYAYSFDGD PQTKRHTLLC RIFSIAAARA ATSAESFAYM ESQSSILMGQ VEQFLENSPP  840
DIAAIIGANC DRTQIPVESM ITDGLHNHAN FINGSADDSL TFPFTMGAGT LDYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376616	0.0	AK376616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129B22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150776.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150777.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150778.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150779.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150781.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150782.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150783.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A446KUR6	0.0	A0A446KUR6_TRITD; Uncharacterized protein
STRING	Traes_2AS_70DFD1AE1.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-104	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]