PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_620B821281.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 570aa    MW: 64279.9 Da    PI: 6.2493
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_620B821281.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.22.1e-1292025693373
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                              lL++cAea+s++ +e+  +l+++ + ++s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l+++k++++++P
  Traes_2AS_620B821281.1 202 GLLTKCAEALSEDRTEEFLKLVQEARGTVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SKELLSYMKILYNICP 285
                             589****************************************************************9...9*************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                             ++kf++++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+++ +e+++
  Traes_2AS_620B821281.1 286 YFKFGYMAANGAIAEALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLTSMSKEFNI 372
                             *************************************************************999999******************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                             p+ef++l +   ++++ e+L+++pgEa+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rfle++
  Traes_2AS_620B821281.1 373 PLEFTPL-SVYATQVTEEMLKIRPGEAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFLETM 458
                             ******6.77899999*********************************************************************** PP

                    GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                             +yysa+f+s++a+lpr+s+eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d 
  Traes_2AS_620B821281.1 459 DYYSAMFESIDANLPRDSKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLSMAGFKPYPLSSYVNSVIKKLLACYS-DK 544
                             *********************************************************************************999.55 PP

                    GRAS 349 yrveeesgslvlgWkdrpLvsvSaW 373
                             y++ee++g+++lgW++r+L+s+SaW
  Traes_2AS_620B821281.1 545 YTLEEKDGTMLLGWNTRKLISASAW 569
                             ************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.012174551IPR005202Transcription factor GRAS
PfamPF035147.3E-127202569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDLHQLFKYR LTGANVFCEI PTENNLANSS WQTSPLKLEF SNSPYTPLST QLECDNLSAL  60
SNTPDNQSST ETISAQPISP LEADSSYIKA GSIRENIQVR PDPLYATSRH NMQQTLRDIE  120
NVLMAPDADD ATTSTKHEFE DTKPAQLMRQ RSRTWSHESR QPLPGVVRPH FASGGYPTAS  180
YEFRPEKRQR ELRDDRQHIV KGLLTKCAEA LSEDRTEEFL KLVQEARGTV SINGEPIQRL  240
GAYLLEGLVA RHGNSGTNIY RALKCREPES KELLSYMKIL YNICPYFKFG YMAANGAIAE  300
ALRSEDNIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEY ARGEGLEIVG  360
NMLTSMSKEF NIPLEFTPLS VYATQVTEEM LKIRPGEAVA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFLETMDY YSAMFESIDA NLPRDSKERI  480
SVEQHCLAKD IVNIIACEGK DRVERHELLG KWKSRLSMAG FKPYPLSSYV NSVIKKLLAC  540
YSDKYTLEEK DGTMLLGWNT RKLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-721845693378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191335.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A3B6AVF80.0A0A3B6AVF8_WHEAT; Uncharacterized protein
STRINGTraes_2AS_620B821281.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]