PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2AS_5B8CF4BA2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 39aa MW: 4670.37 Da PI: 10.0135 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28 | 7.1e-09 | 1 | 38 | 5 | 42 |
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +YA e GFsvrks+ + n+ i+ r+ vCs++g+re Traes_2AS_5B8CF4BA2.1 1 KYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFRE 38 6***********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-6 | 1 | 38 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 39 aa Download sequence Send to blast |
KYALEKGFSV RKSYVEWDGS NKYIILRKIV CSRQGFRED |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-58 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188780.1 | 1e-18 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446RF00 | 2e-17 | A0A446RF00_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A452XQP3 | 6e-17 | A0A452XQP3_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453B6N6 | 7e-17 | A0A453B6N6_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453GGC5 | 7e-17 | A0A453GGC5_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453JUJ9 | 6e-17 | A0A453JUJ9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1BL_9BF41B805.1 | 1e-20 | (Triticum aestivum) | ||||
STRING | Traes_4BL_0437CF0AD.1 | 1e-20 | (Triticum aestivum) | ||||
STRING | Traes_4BL_0437CF0AD1.1 | 1e-20 | (Triticum aestivum) | ||||
STRING | Traes_6AL_B082ABBFC.1 | 1e-20 | (Triticum aestivum) | ||||
STRING | Traes_7AL_5585F9BD1.1 | 1e-20 | (Triticum aestivum) | ||||
STRING | Traes_7AS_0437CF0AD.1 | 1e-20 | (Triticum aestivum) |
Publications ? help Back to Top | |||
---|---|---|---|
|