PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_5A6E08D4E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 16406.1 Da PI: 6.4994 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp Cg++Fs+ L H +H Traes_2AS_5A6E08D4E.1 6 YECPGCGRVFSSYQALGGHRASH 28 99***********9999999887 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0016 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F + L H r+H Traes_2AS_5A6E08D4E.1 90 FECPVCFRVFGSGQALGGHKRSH 112 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.7E-12 | 5 | 30 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.04E-7 | 5 | 28 | No hit | No description |
PROSITE profile | PS50157 | 10.429 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.054 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.04E-7 | 85 | 112 | No hit | No description |
SMART | SM00355 | 0.31 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.7E-11 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.432 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
AKRTRYECPG CGRVFSSYQA LGGHRASHKR INTSCSAPKA APAAAPAPEP SVDTYTSFGT 60 LSPSASPDSV AIGIGAGSSK KPAAGEAEKF ECPVCFRVFG SGQALGGHKR SHIIADAAFS 120 SDGELYGSAS VSVNEEQEQG YPVAAAGSLD LNFPPAPSEE A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003840 | 3e-38 | AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10. | |||
GenBank | AP003915 | 3e-38 | AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03. | |||
GenBank | AP014963 | 3e-38 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182857.1 | 4e-95 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A3B6AV94 | 1e-107 | A0A3B6AV94_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KSP4 | 1e-107 | A0A446KSP4_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AS_5A6E08D4E.1 | 1e-112 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 4e-21 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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