PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_4EFA77404.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 264aa    MW: 28528.2 Da    PI: 6.7916
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_4EFA77404.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.15.9e-11186210125
                G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                            kpr++W+peLH+rF++a++qLGGs+
  Traes_2AS_4EFA77404.2 186 KPRRCWAPELHRRFLQALQQLGGSH 210
                            79*********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-8184210IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
CVCSNRGDEE PDGRRRQRGD GERPGPVLEE FIPLKPSLSL SSSDDETSTH AAVAPVSNAK  60
AETPPPTPET KKAMPDWLQC AQLSSAWSEP QQSSSLQKVL PCRPVALNAT RTGGAFHPFE  120
KEKQPEPELP ASSTTAPASS ALVGDSGDKA TSDTEVHDKD SKDATEKDTD KDKDKEGQSQ  180
PPNNRKPRRC WAPELHRRFL QALQQLGGSH GGDTKADPGA DEGRRPHQRR GQEPSAEVSS  240
AHVKAAELHG PERRRPRNSA HAAV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616380.0AK361638.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1145I13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198678.11e-107myb family transcription factor EFM-like
RefseqXP_020198679.11e-107myb family transcription factor EFM-like
SwissprotQ6Z8693e-41NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A3B6ASP51e-129A0A3B6ASP5_WHEAT; Uncharacterized protein
STRINGTraes_2AS_4EFA77404.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-12G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]