PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_4C9807337.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 26110.6 Da PI: 9.8854 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++e+de+l + v+q+G g+W++Ia+ g+ R++k+c++rw yl Traes_2AS_4C9807337.1 14 RGLWSPEDDEKLMNHVAQYGYGCWSSIAKIAGLERCGKSCRLRWMHYL 61 788*****************************************9996 PP | |||||||
2 | Myb_DNA-binding | 40.6 | 6e-13 | 67 | 109 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++ E++l+++++ G++ W+ Ia+ ++ gRt++++k++w++ Traes_2AS_4C9807337.1 67 GPFSQGEEDLIIHLHSIRGNK-WSQIAAQLP-GRTDNEVKNFWNT 109 799******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.851 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.55E-29 | 11 | 107 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 12 | 64 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.52E-11 | 17 | 61 | No hit | No description |
SMART | SM00717 | 2.0E-11 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.495 | 66 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.5E-12 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 67 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.91E-8 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSKRPGATKK RLKRGLWSPE DDEKLMNHVA QYGYGCWSSI AKIAGLERCG KSCRLRWMHY 60 LTPDRGGPFS QGEEDLIIHL HSIRGNKWSQ IAAQLPGRTD NEVKNFWNTI IKKKLRQRRI 120 DPAIHKPLAH AGAAAAATPV TRTAVFSEAE LILSSPVGTQ PMPPLVSAES YVYSRGSMDG 180 AGGAHAALGG CSDDGSLSSL SGYNNNQKAD FPGYLDADAL HGAVIPSVWS SRTLNWWRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 12 | 115 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353785 | 0.0 | AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23. | |||
GenBank | AK358210 | 0.0 | AK358210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154053.1 | 1e-117 | transcription factor MYB3-like | ||||
Swissprot | Q8LPH6 | 2e-57 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A3B6AV62 | 1e-177 | A0A3B6AV62_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AS_4C9807337.1 | 1e-178 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP60265 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-59 | myb domain protein 86 |
Publications ? help Back to Top | |||
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