PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_40FA27AE7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 379aa    MW: 40769 Da    PI: 7.4358
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_40FA27AE7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171360148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W++eEde+l+++++ +G  +W+++++  g+ R++k+c++rw +yl
  Traes_2AS_40FA27AE7.1 13 RGLWSPEEDEKLLRYITAHGHSCWSAVPKNAGLQRCGKSCRLRWINYL 60
                           788*******************************************97 PP
2Myb_DNA-binding49.97.2e-1666109146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Traes_2AS_40FA27AE7.1  66 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                            899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-26463IPR009057Homeodomain-like
PROSITE profilePS5129416.905860IPR017930Myb domain
SuperFamilySSF466895.99E-2810107IPR009057Homeodomain-like
SMARTSM007175.5E-131262IPR001005SANT/Myb domain
PfamPF002496.9E-151360IPR001005SANT/Myb domain
CDDcd001672.25E-111660No hitNo description
PROSITE profilePS5129425.33861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2464116IPR009057Homeodomain-like
SMARTSM007172.1E-1565113IPR001005SANT/Myb domain
PfamPF002491.2E-1466109IPR001005SANT/Myb domain
CDDcd001671.75E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLLRYITA HGHSCWSAVP KNAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLLPA SKNLLHAHGA TGSSSNPSNN PAAGAQFHSP NGNRNGCATP LFTISSPTKA  180
IYDAATVAPG LYDVHNPGML MGQHERGHQA ALAMQQGYPY VHNNGGGLLL SFRDQTAAGV  240
HASMDFMNGS SNSSSSMEYA AGMPNGNVFN PGVAAFMDET AAMWATVVEP GMGPGIEMAH  300
EHRQQHGLGL EEVVRLGPPP PPLINGGSSG GKGLDMMDVS SEVYGSAGTT AAFDLELMES  360
CGLFCGAAGN GMEQLQWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040061e-52AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042591e-52AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149631e-52AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-52CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166429.10.0transcription factor MYB26-like
TrEMBLA0A3B6AW250.0A0A3B6AW25_WHEAT; Uncharacterized protein
TrEMBLA0A446KWT60.0A0A446KWT6_TRITD; Uncharacterized protein
STRINGTraes_2AS_40FA27AE7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.16e-83myb domain protein 67
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]