PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_40682422C1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 89aa MW: 10730.3 Da PI: 9.7478 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.8 | 7.7e-18 | 20 | 88 | 1 | 66 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkakl 66 +fYn+YA e GFsvrk + + + n++i+ r++vCs+eg ree++ k ++++r++r+ tr+gCkak+ Traes_2AS_40682422C1.1 20 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCSREGCREEKHMKrkrEDRKRKPRNITRVGCKAKF 88 6*****************************************99988777889999***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.6E-16 | 20 | 88 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MAEYDGIVSR MFDSEEEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCSREGCR 60 EEKHMKRKRE DRKRKPRNIT RVGCKAKFV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 74 | KREDRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156981.1 | 4e-56 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453S9S8 | 5e-56 | A0A453S9S8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2AS_40682422C.1 | 4e-58 | (Triticum aestivum) | ||||
STRING | Traes_2AS_40682422C1.1 | 4e-58 | (Triticum aestivum) | ||||
STRING | Traes_4AS_551523088.1 | 3e-58 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 3e-08 | FAR1-related sequence 12 |
Publications ? help Back to Top | |||
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