PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_40682422C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 89aa    MW: 10730.3 Da    PI: 9.7478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_40682422C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.87.7e-182088166
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkakl 66
                           +fYn+YA e GFsvrk + +  + n++i+ r++vCs+eg ree++ k   ++++r++r+ tr+gCkak+
  Traes_2AS_40682422C.1 20 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCSREGCREEKHMKrkrEDRKRKPRNITRVGCKAKF 88
                           6*****************************************99988777889999***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-162088IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MAEYDGIVSR MFDSEEEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCSREGCR  60
EEKHMKRKRE DRKRKPRNIT RVGCKAKFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774KREDRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156981.14e-56protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453S9S85e-56A0A453S9S8_AEGTS; Uncharacterized protein
STRINGTraes_2AS_40682422C.14e-58(Triticum aestivum)
STRINGTraes_2AS_40682422C1.14e-58(Triticum aestivum)
STRINGTraes_4AS_551523088.13e-58(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-08FAR1-related sequence 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]