PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_25C93FD29.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 169aa MW: 19485.2 Da PI: 10.7052 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++ G g+W++ ar+ g++Rt+k+c++rw++yl Traes_2AS_25C93FD29.1 23 RGPWTVEEDVLLANYIAANGEGRWNALARRAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.4e-17 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+eE++l +++++++G++ W++Ia++++ gRt++++k++w++ Traes_2AS_25C93FD29.1 76 RGGMTAEEQLLVLELHARWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 6789******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.789 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.4E-29 | 22 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-16 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.39E-10 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 23.289 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-23 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-11 | 79 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MACDQRGMRG EETAAGEEEM LRRGPWTVEE DVLLANYIAA NGEGRWNALA RRAGLKRTGK 60 SCRLRWLNYL RPDLRRGGMT AEEQLLVLEL HARWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQRHAKQLRC DVGSQRFRDL VRGLWIPRLL ERIHAANSSG EGDVIAQAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-25 | 20 | 123 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-25 | 20 | 123 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368690 | 0.0 | AK368690.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2078D05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189377.1 | 1e-105 | protein ODORANT1-like | ||||
Swissprot | Q10MB4 | 5e-83 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A3B6ARG6 | 1e-118 | A0A3B6ARG6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KLF1 | 1e-117 | A0A446KLF1_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AS_25C93FD29.1 | 1e-119 | (Triticum aestivum) | ||||
STRING | Traes_2AS_25C93FD291.1 | 1e-119 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-77 | myb domain protein 112 |