PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AS_09457EDD8.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 398aa MW: 43138.7 Da PI: 10.8553

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_09457EDD8.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.2e-53	32	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+ Traes_2AS_09457EDD8.2 32 LPPGFRFHPTDEELVVHYLKKKAAKVPLPV-TIIAEVDLYKFDPWELPEKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGT 118 79**************************.89***********988899****************************** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++l++ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Traes_2AS_09457EDD8.2 119 DKPILASgcGREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 160 **9999999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.29E-60	29	166	IPR003441	NAC domain
PROSITE profile	PS51005	56.164	32	188	IPR003441	NAC domain
Pfam	PF02365	9.6E-28	33	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MRSMGSSDSS SGSAPPRHQP PPPPQQGSAP DLPPGFRFHP TDEELVVHYL KKKAAKVPLP 60 VTIIAEVDLY KFDPWELPEK ATFGEQEWYF FSPRDRKYPN GARPNRAATS GYWKATGTDK 120 PILASGCGRE KVGVKKALVF YRGKPPKGLK TNWIMHEYRL TDASSSATTS RPPPVXXXQG 180 CLSQVGRLGA VPHIQEDQQG RRRGSAEEHG VRGLRGGRRH RIPALCHGGH DRCRGAWQQL 240 RFTAPSPGQP RGQLPGRPAH SRGRRPLGGX SLSHLAAAAR ASPAPTKQFL APSSSTPFNW 300 LDASTVGILP QARNFPGFNR SRNVGNMSLS STADMAVDNG GGNAINAMPP FMNHLPVQDG 360 TYHQQHVILG TPLAPEATAA ATSAFQHPVQ ISGVNWNP

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MRSMGSSDSS SGSAPPRHQP PPPPQQGSAP DLPPGFRFHP TDEELVVHYL KKKAAKVPLP  60
VTIIAEVDLY KFDPWELPEK ATFGEQEWYF FSPRDRKYPN GARPNRAATS GYWKATGTDK  120
PILASGCGRE KVGVKKALVF YRGKPPKGLK TNWIMHEYRL TDASSSATTS RPPPVXXXQG  180
CLSQVGRLGA VPHIQEDQQG RRRGSAEEHG VRGLRGGRRH RIPALCHGGH DRCRGAWQQL  240
RFTAPSPGQP RGQLPGRPAH SRGRRPLGGX SLSHLAAAAR ASPAPTKQFL APSSSTPFNW  300
LDASTVGILP QARNFPGFNR SRNVGNMSLS STADMAVDNG GGNAINAMPP FMNHLPVQDG  360
TYHQQHVILG TPLAPEATAA ATSAFQHPVQ ISGVNWNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-64	32	164	17	146	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-64	32	164	17	146	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-64	32	164	17	146	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-64	32	164	17	146	NO APICAL MERISTEM PROTEIN
3swm_A	3e-64	32	164	20	149	NAC domain-containing protein 19
3swm_B	3e-64	32	164	20	149	NAC domain-containing protein 19
3swm_C	3e-64	32	164	20	149	NAC domain-containing protein 19
3swm_D	3e-64	32	164	20	149	NAC domain-containing protein 19
3swp_A	3e-64	32	164	20	149	NAC domain-containing protein 19
3swp_B	3e-64	32	164	20	149	NAC domain-containing protein 19
3swp_C	3e-64	32	164	20	149	NAC domain-containing protein 19
3swp_D	3e-64	32	164	20	149	NAC domain-containing protein 19
4dul_A	3e-64	32	164	17	146	NAC domain-containing protein 19
4dul_B	3e-64	32	164	17	146	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM820890	0.0	KM820890.1 Triticum aestivum cultivar Chinese Spring NAC transcription factor NAM-D2 (NAM-D2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200235.1	0.0	NAC transcription factor NAM-B2
Swissprot	A0SPJ9	0.0	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A0A7P0G7	0.0	A0A0A7P0G7_WHEAT; NAC transcription factor NAM-D2
STRING	Traes_2AS_09457EDD8.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	9e-77	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]