PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AS_0186B9E4F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 421aa MW: 46000.9 Da PI: 6.9107 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.5 | 4.7e-27 | 152 | 207 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK vkg ++p+sYY+Ct +Cpv+k+ve+sa d+++++i+Y+g+H he Traes_2AS_0186B9E4F.2 152 DDGYNWRKYGQKAVKGGKYPKSYYKCTL-NCPVRKNVEHSA-DGRIIKIIYRGQHCHE 207 8*************************97.7***********.***************7 PP | |||||||
2 | WRKY | 102.4 | 2.5e-32 | 315 | 373 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct++gC vkk++ers+e+p++v++tYeg+H+h+ Traes_2AS_0186B9E4F.2 315 LDDGYRWRKYGQKVVRGNPHPRSYYKCTYQGCDVKKHIERSSEEPHAVITTYEGKHTHD 373 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-24 | 148 | 209 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-21 | 149 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-28 | 151 | 208 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-21 | 152 | 206 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.885 | 152 | 209 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.0E-35 | 302 | 375 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-29 | 308 | 375 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.645 | 310 | 375 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-38 | 315 | 374 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-25 | 316 | 373 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MVAPSSSILK ASRSLIDNFD VFHEQDLAQL AAQVAQKKEL REKQGAGLHH KIGPQLAFSK 60 YSILDQVDNS SSFSLATSVL TPQHVSSSVG AASMQGQTLP SHTGSGSVNT GPTGVLQVLQ 120 DSSTTLDSIN TGSAGVLEAL QGSSITLDKP ADDGYNWRKY GQKAVKGGKY PKSYYKCTLN 180 CPVRKNVEHS ADGRIIKIIY RGQHCHEPPS KRFKDCGDLL NELDEFNDAK DPSTRSQLGC 240 QGYYGKPITP NGTMVDGLLP TKEEGDEQLS SLSDIREGDG EIRTVDGDVG DADANERNAP 300 GQKIIVSTTS DVDLLDDGYR WRKYGQKVVR GNPHPRSYYK CTYQGCDVKK HIERSSEEPH 360 AVITTYEGKH THDVPESRNR SQGTGQHHCK EQTYSEQPAA SFCSSSEKRK YGTAILNDLA 420 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-34 | 152 | 375 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-34 | 152 | 375 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU665430 | 0.0 | EU665430.1 Triticum aestivum WRKY19 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146250.1 | 0.0 | probable WRKY transcription factor 3 | ||||
TrEMBL | A0A3B6AVB9 | 0.0 | A0A3B6AVB9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AS_0186B9E4F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 6e-71 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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