PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_FAB4B4A20.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 248aa    MW: 28073.9 Da    PI: 6.0401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_FAB4B4A20.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-094485754
                           HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           ++Er+RR+ +N af  Lr llP +      K + ++ +e A+eYI++L
  Traes_2AL_FAB4B4A20.2 44 ANERQRREWMNVAFWALRILLPDP------KDDRVSNVEDAIEYIHEL 85
                           79**********************......88888899*******998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003531.4E-54391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-64485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1044102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-745100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-64690No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MCTATPQSAS ARCCLVNMIV GGGYFEGSHD HNLMPGSLIK PDFANERQRR EWMNVAFWAL  60
RILLPDPKDD RVSNVEDAIE YIHELNRTVK ELKILVEQKR HGTNRKKMIK MDEEAASDGE  120
NSSTMPVRDE QDNELDWAIR SSWVQRRSQE CRVDVHIVEN AVNVQLTEWK NANSLPHAAK  180
VLDEFHLEII SVVGQIVGDH RIFIFNTKVS EGCSVYALAV AERLFQAVDA QHQALNILGQ  240
ALATKLTI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634639.13e-92transcription factor EAT1
RefseqXP_015634640.13e-92transcription factor EAT1
RefseqXP_015634641.13e-92transcription factor EAT1
RefseqXP_020152149.16e-92transcription factor EAT1-like
SwissprotQ7X8R02e-93EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A3B6B4C60.0A0A3B6B4C6_WHEAT; Uncharacterized protein
TrEMBLA0A446LFJ00.0A0A446LFJ0_TRITD; Uncharacterized protein
STRINGTraes_2AL_FAB4B4A20.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-36bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]