PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_FAB4B4A20.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28073.9 Da PI: 6.0401 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.6 | 5.3e-09 | 44 | 85 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++Er+RR+ +N af Lr llP + K + ++ +e A+eYI++L Traes_2AL_FAB4B4A20.2 44 ANERQRREWMNVAFWALRILLPDP------KDDRVSNVEDAIEYIHEL 85 79**********************......88888899*******998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00353 | 1.4E-5 | 43 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-6 | 44 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-10 | 44 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-7 | 45 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.14E-6 | 46 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MCTATPQSAS ARCCLVNMIV GGGYFEGSHD HNLMPGSLIK PDFANERQRR EWMNVAFWAL 60 RILLPDPKDD RVSNVEDAIE YIHELNRTVK ELKILVEQKR HGTNRKKMIK MDEEAASDGE 120 NSSTMPVRDE QDNELDWAIR SSWVQRRSQE CRVDVHIVEN AVNVQLTEWK NANSLPHAAK 180 VLDEFHLEII SVVGQIVGDH RIFIFNTKVS EGCSVYALAV AERLFQAVDA QHQALNILGQ 240 ALATKLTI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634639.1 | 3e-92 | transcription factor EAT1 | ||||
Refseq | XP_015634640.1 | 3e-92 | transcription factor EAT1 | ||||
Refseq | XP_015634641.1 | 3e-92 | transcription factor EAT1 | ||||
Refseq | XP_020152149.1 | 6e-92 | transcription factor EAT1-like | ||||
Swissprot | Q7X8R0 | 2e-93 | EAT1_ORYSJ; Transcription factor EAT1 | ||||
TrEMBL | A0A3B6B4C6 | 0.0 | A0A3B6B4C6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LFJ0 | 0.0 | A0A446LFJ0_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_FAB4B4A20.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1904 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 7e-36 | bHLH family protein |
Publications ? help Back to Top | |||
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