PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_F24D031AA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 262aa    MW: 27701.1 Da    PI: 4.345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_F24D031AA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-184191155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g
  Traes_2AL_F24D031AA.1 41 TRYLGVRRRP-WGRYAAEIRDPAT---KDRHWLGTFDTAEEAAVAYDRAARSLRG 91
                           5799******.**********843...4*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.71E-3041100No hitNo description
SuperFamilySSF541717.19E-214299IPR016177DNA-binding domain
PfamPF008479.2E-114291IPR001471AP2/ERF domain
SMARTSM003803.7E-3342105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-284299IPR001471AP2/ERF domain
PROSITE profilePS5103221.5354299IPR001471AP2/ERF domain
PRINTSPR003671.9E-84354IPR001471AP2/ERF domain
PRINTSPR003671.9E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSSSSSDK KSSSSKRRQQ AAQQQPDSNP TRYLGVRRRP WGRYAAEIRD  60
PATKDRHWLG TFDTAEEAAV AYDRAARSLR GVRARTNFAY PDLPPGSSIT PYLSPDLTSD  120
DNAVQLLQPF YADPVPPLPT HQPAAGGGGQ DVGSEYLYGG APDMSSLMDD IAMPDDLPMI  180
DGGGDMDFSM YGVGGNGANA AGGGGWCDAS ELGAYSSTPG GGHGVYFEEG YVHSPLFSPM  240
PAADDAGADG FQLGGSSSSY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-174398662ATERF1
3gcc_A1e-174398662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282751e-105KJ728275.1 Zea mays clone pUT6553 AP2-EREBP transcription factor (EREB125) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188896.10.0ethylene-responsive transcription factor LEP-like
TrEMBLA0A446L3400.0A0A446L340_TRITD; Uncharacterized protein
STRINGTraes_2AL_F24D031AA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-31ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]