PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_EA60A06AC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 553aa MW: 59624.5 Da PI: 10.4134 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126 | 3.9e-39 | 177 | 315 | 3 | 131 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.eaesssssasn 84 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk++eWL+++a +ai++l+++ ++ +as++ +++ss a++ Traes_2AL_EA60A06AC.1 177 GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAVEWLIKAAAAAIDKLPELdaaafPNHPASASaNKQSSALHAEA 264 78*************************************************************8887744444444444444444444 PP TCP 85 sssg...kaaksaakskksqksaasalnlak.esrakarararertrekmr 131 ++s+ ++ + + +s+ s++s+ s+l+l++ +sr kar+rar+r+++ + Traes_2AL_EA60A06AC.1 265 DGSQlqqQQLTRSGCSSTSETSKGSVLSLSRsDSRVKARERARDRSASVKD 315 444466566677779999**************************9887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.3E-40 | 177 | 313 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.112 | 178 | 236 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.504 | 296 | 316 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
IEWYAPTASF RTPPSSSLIK SGDLSLPPSL HRLLSSYSHS TSPLSLPPSP RRAPSTPLPS 60 PQGAHGIARR SVPPIPRARL PLPASPRRPA WLNFATNALW VGHERHWRRL AGGPIHIRME 120 LSVAAAAVEL GKRGRPEDQD HDQEQDHGDA KRLALVPWPP HQQHPSSRIY RVSRGSGGKD 180 RHSKVYTAKG IRDRRVRLSV ATAIQFYDLQ DRLGYDQPSK AVEWLIKAAA AAIDKLPELD 240 AAAFPNHPAS ASANKQSSAL HAEADGSQLQ QQQLTRSGCS STSETSKGSV LSLSRSDSRV 300 KARERARDRS ASVKDKDDSV TAAVRRRAPS AQAASFTELL TGLAAATPAV AQHKQHNSWQ 360 QMTASATADY LGFSQPRKSG HGMLHTFASP APHLGNIVPV AMAPAQHFSL SAGGGDSQTD 420 MPHFSFSQDH YMPVHAAPAS APAVDYSLNF SMCSGLVGVN NTRGTLQSNS QPHLSGHHHH 480 QQQLQRLSTP LDAPHIPFLF SPAVAVASPT TAESHFGAAA ALQLWEGFRH SXRHEGEGQE 540 LINGCALLLD AGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-26 | 183 | 237 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 8e-26 | 183 | 237 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370348 | 0.0 | AK370348.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2109C05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165443.1 | 0.0 | transcription factor PCF6-like | ||||
TrEMBL | A0A3B6AYU1 | 0.0 | A0A3B6AYU1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KZ32 | 0.0 | A0A446KZ32_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_EA60A06AC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-40 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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