PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_E687AF1BE.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 352aa MW: 39053 Da PI: 6.654 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30 | 8.9e-10 | 278 | 313 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ Traes_2AL_E687AF1BE.2 278 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 313 4679*****************************885 PP | |||||||
2 | ELK | 37.8 | 4e-13 | 233 | 254 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLl+KYsgyL+sL+qEFs Traes_2AL_E687AF1BE.2 233 ELKYQLLKKYSGYLSSLRQEFS 254 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.7E-21 | 84 | 128 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.4E-21 | 85 | 126 | IPR005540 | KNOX1 |
SMART | SM01256 | 7.1E-29 | 132 | 183 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.7E-24 | 138 | 182 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.627 | 233 | 253 | IPR005539 | ELK domain |
SMART | SM01188 | 1.2E-7 | 233 | 254 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.2E-10 | 233 | 254 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.892 | 253 | 316 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-19 | 254 | 327 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.4E-13 | 255 | 320 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-28 | 258 | 317 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.03E-12 | 265 | 317 | No hit | No description |
Pfam | PF05920 | 9.8E-17 | 273 | 312 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 291 | 314 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MDQSSFGNLG AGEGGSSSSK ASSSFLQLQP LSTTTVASGR GPMGGTYYGT PLALHQAAAA 60 AGSSQYQFHH HKSSGEEISQ AEAEAIKAKI MAHPQYTALL VAYLDCQKVG APPDVLERLT 120 AMAAKLDAHP PGRLHEARDP ELDQFMEAYC NMLAKYREEL TRPIEEAMEF LKRVEAQLDS 180 ITGGGHGSAR LSLAALQLGY GKCEGAGSSE DEMDASGREN EPPEIDPRAE DKELKYQLLK 240 KYSGYLSSLR QEFSKKKKKG KLPKEARQKL LHWWELHYKW PYPSETEKIA LAESTGLDQK 300 QINNWFINQR KRHWKPSEDM PFVMMEGFHP QNAAALYMDG QFMADGMYRL GS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF544045 | 0.0 | AF544045.1 Hordeum vulgare knotted 1 (kn1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180358.1 | 0.0 | homeobox protein knotted-1-like 12 | ||||
Swissprot | O65034 | 1e-171 | KNOSC_ORYSI; Homeobox protein knotted-1-like 12 | ||||
Swissprot | O80416 | 1e-171 | KNOSC_ORYSJ; Homeobox protein knotted-1-like 12 | ||||
TrEMBL | A0A446L0Q8 | 0.0 | A0A446L0Q8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_E687AF1BE.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4061 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-101 | KNOTTED-like from Arabidopsis thaliana |