PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_E5B3B79F7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 33305.4 Da PI: 6.0882 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.5 | 8.2e-15 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv+ +++ Gg+ +W+ ++ g++R++k+c++rw +yl Traes_2AL_E5B3B79F7.1 15 KGPWTEEEDKALVEHIQKRGGNvgSWRGLPKAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ Traes_2AL_E5B3B79F7.1 70 RGNFSDEEERLIITLHAGLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 7 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.819 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.09E-27 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-10 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-13 | 15 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.23E-8 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.538 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-26 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.20E-11 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGNVGSW RGLPKAAGLN RCGKSCRLRW 60 TNYLRPDIKR GNFSDEEERL IITLHAGLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPPDRTNHD VNGAAAALLW AAAAASLGGL DTGALMQAQL LQQLLQAIGS 180 NNSTTGLIAN LAAANTVLNS SSSFVPNQMN YLQTGYLCNN SNLSEQHVVQ QQLTNDTSPG 240 TSSFAAAEPA DQLCNTAASY DVAPAGDWSL TQEFGGLLEP MMELPGLCSL EGDSFWKDIL 300 EDSYRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 15 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243271 | 1e-134 | AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169245.1 | 0.0 | myb-related protein Zm38-like | ||||
TrEMBL | A0A3B6B4I4 | 0.0 | A0A3B6B4I4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AL_E5B3B79F7.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-70 | myb domain protein 9 |
Publications ? help Back to Top | |||
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