PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_E2F8D46CE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 319aa    MW: 34281 Da    PI: 6.5238
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_E2F8D46CE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.3e-121181541048
                            HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            + +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Traes_2AL_E2F8D46CE.2 118 QSIIQLHQLLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 154
                            6789*********.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0011106156IPR001005SANT/Myb domain
PROSITE profilePS5129413.398107158IPR017930Myb domain
PfamPF002491.4E-10117154IPR001005SANT/Myb domain
CDDcd001678.82E-8117154No hitNo description
Gene3DG3DSA:1.10.10.603.8E-18117155IPR009057Homeodomain-like
SuperFamilySSF466893.26E-10118158IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
GINTRGTPAT PPLLRGIRQA SRAPSHLFSS LVFSSLPQGG QRHSASASGL LRAREFGRER  60
GGNGEGSVLR EDGPQEGPLD AGGGQDPGRP HPQPRPRQLA RAAQASRPAA VRQELPEQSI  120
IQLHQLLGNR WSAIAARLPG RTDNEIKNVW HTHLKKRLDP GAQEQLEEAS AAKKRKKPAA  180
AARKREGKIK MRKLDALTAK AAPVLSSPDR SVSSTLTEST STASAAEEQH GNSGSSASAS  240
ASVKEECFTS SEESEEFQID ESFWSETLSM PLDDINDVCM EPHDAFGKPA DGDMDYWLKV  300
FMEGGGDDNN DGALDLPQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154176KKRLDPGAQEQLEEASAAKKRKK
2172176KKRKK
3175192KKPAAAARKREGKIKMRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6151990.0AY615199.1 Triticum aestivum transcription factor Myb2 (Myb2) mRNA, complete cds.
GenBankJF9519430.0JF951943.1 Triticum aestivum clone TaMYB60 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164748.17e-92myb-related protein Myb4-like
SwissprotQ7XBH42e-50MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A3B6B2Y01e-143A0A3B6B2Y0_WHEAT; Uncharacterized protein
TrEMBLA0A446LAH01e-143A0A446LAH0_TRITD; Uncharacterized protein
STRINGTraes_2AL_E2F8D46CE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.24e-21myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]