PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_CC3E5591E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24308.3 Da    PI: 8.754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_CC3E5591E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.3e-1758111356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++++t+eq e Le  F+++r++ + ++  LA++lgL+ +qV vWFq rRa++k
  Traes_2AL_CC3E5591E.1  58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQYRRARHK 111
                            45689***********************************************99 PP
2HD-ZIP_I/II1101.6e-3558149293
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            kkrrl++eq+++LE sF+ee+kLe+ rKv la eLgl+p+qvavWFq rRAR+k+k lE+++++Lk+a+da   ++++Le+ev +L+e
  Traes_2AL_CC3E5591E.1  58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQYRRARHKSKTLEQEFARLKHAHDAAILHKCHLENEVLRLKE 145
                            9**************************************************************************************9 PP

            HD-ZIP_I/II  90 elke 93 
                            +l++
  Traes_2AL_CC3E5591E.1 146 KLRA 149
                            9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-1547115IPR009057Homeodomain-like
PROSITE profilePS5007114.78753113IPR001356Homeobox domain
SMARTSM003893.1E-1356117IPR001356Homeobox domain
CDDcd000869.56E-1358113No hitNo description
PfamPF000462.3E-1458111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-1560118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDNQQLFGSS YVDTPFFAAN GTAQRESQPK ARRRRRRAAR CGGGDGNGWE MDGGGDPKKR  60
RLTDEQAEML ELSFREERKL ETGRKVYLAA ELGLDPKQVA VWFQYRRARH KSKTLEQEFA  120
RLKHAHDAAI LHKCHLENEV LRLKEKLRAT AEEVQRLRSA AGIHADGGDS AGAVSVCGGS  180
PRSSFSTGTC QQHPGFSGAD VLGRDDDLMM CVPEWFFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13139RRRRRRAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2597830.0AB259783.1 Hordeum vulgare subsp. vulgare Vrs1 mRNA for homeodomain leucine zipper protein Vrs1, complete cds, allele: Vrs1.b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176255.11e-126homeobox-leucine zipper protein HOX14-like
SwissprotA2YN171e-67HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
SwissprotQ7XI859e-68HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A3B6U9511e-160A0A3B6U951_WHEAT; Uncharacterized protein
TrEMBLA0A446LAW61e-160A0A446LAW6_TRITD; Uncharacterized protein
STRINGTraes_2AL_CC3E5591E.11e-161(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-37homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]