PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_CA89051FD.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 335aa MW: 36792.8 Da PI: 7.5739

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_CA89051FD.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.7	1.2e-49	57	187	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhP+d+elv +yL++k++g v + +vd++k+ePw+Lp ++ + kewyfFs++d+kyatg+r+nrat++gyWkat Traes_2AL_CA89051FD.1 57 LPPGFRFHPRDHELVLDYLCHKLSGGGgRGGGGVdMVDVDLNKCEPWELPDAACVGGKEWYFFSRHDRKYATGQRTNRATHTGYWKAT 144 79********************999533334569999*******7666789*************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ ++ ++vg++ktLvfy grap+g+kt+Wvmhe+r+ Traes_2AL_CA89051FD.1 145 GKDRVITGDgAAAVVGMRKTLVFYLGRAPRGTKTEWVMHEFRV 187 ***9755667*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.28E-56	46	223	IPR003441	NAC domain
PROSITE profile	PS51005	53.427	57	223	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	58	187	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MASEISSSIN TGPCPCPGPI VFGRVLLLYL SNLFPVCFKS SGRAKMSSSM SMVEARLPPG 60 FRFHPRDHEL VLDYLCHKLS GGGGRGGGGV DMVDVDLNKC EPWELPDAAC VGGKEWYFFS 120 RHDRKYATGQ RTNRATHTGY WKATGKDRVI TGDGAAAVVG MRKTLVFYLG RAPRGTKTEW 180 VMHEFRVEGR PPRSVHRQLA TPHDGSPPFL LEEDWVLCRV FYKSTTAAPT PASDESSGSL 240 SSDLGVAPVL LPVAPINVVG RTQMAEITDG YYGQQEHPTG ILPVVHHWPV ASLPFTSFRD 300 LLGDMVEGSR GDPKPEWSVD DGYTRQSVPQ TWNPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	52	227	12	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	52	227	12	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	52	227	12	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	52	227	12	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	52	227	15	172	NAC domain-containing protein 19
3swm_B	1e-47	52	227	15	172	NAC domain-containing protein 19
3swm_C	1e-47	52	227	15	172	NAC domain-containing protein 19
3swm_D	1e-47	52	227	15	172	NAC domain-containing protein 19
3swp_A	1e-47	52	227	15	172	NAC domain-containing protein 19
3swp_B	1e-47	52	227	15	172	NAC domain-containing protein 19
3swp_C	1e-47	52	227	15	172	NAC domain-containing protein 19
3swp_D	1e-47	52	227	15	172	NAC domain-containing protein 19
4dul_A	1e-47	52	227	12	169	NAC domain-containing protein 19
4dul_B	1e-47	52	227	12	169	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	88	GGRGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152869.1	0.0	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	2e-68	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A3B6B4H5	0.0	A0A3B6B4H5_WHEAT; Uncharacterized protein
TrEMBL	A0A446LGE5	0.0	A0A446LGE5_TRITD; Uncharacterized protein
STRING	Traes_2AL_CA89051FD.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12977.1	2e-68	NAC family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]