PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_C70217249.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 515aa    MW: 55849.1 Da    PI: 5.9224
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_C70217249.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.3e-22111211299
                            EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                             k+lt+sd+++ g +++p+ +ae           ++ +   l+++d+ gr W++++iyr++++r++lt+GW++Fv+a+ L +gD vvF
  Traes_2AL_C70217249.1 111 AKQLTQSDANNGGGFSVPRFCAELVfppldfeADPPVQ--RLRMTDPLGRGWDFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGDAVVF 196
                            69****************8777555*****96555555..7*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                            +  +r ++el+ +++r+
  Traes_2AL_C70217249.1 197 M--RRADGELLAGIRRA 211
                            *..6699999****997 PP
2Auxin_resp48.34.3e-17241315182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                            a++ a+++ +F+v+Y+Pr+++ eFvv+ ++ve+al   +++G +++m+f   + ++ ++  G+v +v    p     S Wr+L
  Traes_2AL_C70217249.1 241 AVRLAAEGAPFTVTYYPRQGAGEFVVPKQEVEDALVGAWAPGVQVRMKFLDAEERRSEWvNGIVKAVD---P-----SIWRML 315
                            6778999******************************************8888888888688877654...4.....555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-27106214IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-31106214IPR015300DNA-binding pseudobarrel domain
CDDcd100174.41E-18108210No hitNo description
SMARTSM010196.2E-13110212IPR003340B3 DNA binding domain
PROSITE profilePS5086312.153110212IPR003340B3 DNA binding domain
PfamPF023627.6E-20111211IPR003340B3 DNA binding domain
PfamPF065077.6E-13241312IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MADAPPPATP APLDRDVWLA CATPLSRVPV VGSQVYYFPH GHSEQCPAPP RAPAHNLFPC  60
TVAAVRFFAD PKTDEPFATV DLVPGPHRDP ALHLPDAHAH ADAATGFRYY AKQLTQSDAN  120
NGGGFSVPRF CAELVFPPLD FEADPPVQRL RMTDPLGRGW DFRHIYRGTP RRHLLTTGWS  180
KFVNAKLLVA GDAVVFMRRA DGELLAGIRR APRYPAVSQQ GAERRPRNAR ARVPPEEVDE  240
AVRLAAEGAP FTVTYYPRQG AGEFVVPKQE VEDALVGAWA PGVQVRMKFL DAEERRSEWV  300
NGIVKAVDPS IWRMLEIDWD ESVVGSLRNR HVNAWQVELV GYPPILKKLK ISETTLPPMC  360
SGDVGMADPL LGPDCENMVM LLGSPMPAGM QGARHIGLTE LPSSSPTVLT TKQFFPPSSS  420
GGSSEVVNPE AGSPPNNSVN MRPSEERRSI QLFGATITSP VQSATNGSSE EVSQAPDAAV  480
DGTAHEYASA TSLLDCQLTI GKDDGHDRNA SKQEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-581333851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735910.0AK373591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035M12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579544.10.0auxin response factor 13
RefseqXP_010240662.10.0auxin response factor 13
SwissprotQ7XSS91e-152ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A3B6B9X40.0A0A3B6B9X4_WHEAT; Auxin response factor
STRINGTraes_2AL_C70217249.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-84auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]