PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_C3E7F1648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GATA | ||||||||
Protein Properties | Length: 450aa MW: 48779.9 Da PI: 6.9703 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.6 | 5.2e-16 | 8 | 42 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r +g+ Traes_2AL_C3E7F1648.1 8 CGHCGVTSTPLWRNGPPDKPVLCNACGSRWRIRGT 42 9***************55555**********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.9E-11 | 2 | 56 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.9E-11 | 5 | 47 | No hit | No description |
CDD | cd00202 | 3.02E-15 | 7 | 76 | No hit | No description |
PROSITE profile | PS50114 | 11.78 | 8 | 61 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.4E-12 | 8 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 8.3E-14 | 8 | 42 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MAKKEGPCGH CGVTSTPLWR NGPPDKPVLC NACGSRWRIR GTLVNYTPAH RREDTGASEA 60 RPDKLKLKGQ KQPKKRPNRS TVKDEPWSDQ NFWKMGNADT SNRSGSGSAV SYSESCAPYG 120 SIDASEIVGS AQSHAWESLV PSRKRSCVSR PKPSALEALV DDLNSIMHEE QLYCLSAGST 180 EEDLLYHSET PAGSFEIGYG SVLLRHPNTK SEEEESEANS VPADTKSYIT SESYSGCASF 240 IAHSEIKGAS NSNAASEKLK WSSMQTHDSA RRDELHYSNQ HILESADSAL DSVALEDNYS 300 KEVGGLTKSS MRSLKRPYES QPQSFTDAEV RGGTMRIASS RSGAMASSCQ LRRSAFLPKS 360 GNATGASLNL FMLAPDKLSS MLNPSDKDSD QDSLLLEVPR NARHPEAELL LCCPPPSQLS 420 SGTVTAASPP TPSNHSPGSA SDQLRNRHQW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376837 | 0.0 | AK376837.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137I18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175110.1 | 0.0 | GATA transcription factor 26-like isoform X1 | ||||
Refseq | XP_020175118.1 | 0.0 | GATA transcription factor 26-like isoform X1 | ||||
TrEMBL | A0A3B6B8D5 | 0.0 | A0A3B6B8D5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AL_C3E7F1648.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4424 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 7e-55 | GATA transcription factor 26 |
Publications ? help Back to Top | |||
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