PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_C0670BBDD.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 324aa    MW: 35782 Da    PI: 7.7996
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_C0670BBDD.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.7e-52131551128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkr 73 
                            +ppGfrFhPt+eelv +yL++kv++++++l  +i+evd+y++ePwdL++               + +++++ewyfFs +d+ky++g+r
  Traes_2AL_C0670BBDD.2  13 VPPGFRFHPTEEELVGYYLARKVAAQNIDL-GIIQEVDLYRTEPWDLQEkcgggrggrgtrqvaADEQSSSEWYFFSFKDRKYPSGTR 99 
                            69****************************.99**************955899999999885432222445***************** PP

                    NAM  74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +nrat++g+Wkatg+dk+v+s+ +++++g++ktLvfy+grap+g+ktdW++heyrl
  Traes_2AL_C0670BBDD.2 100 TNRATAAGFWKATGRDKPVTSSrSRSVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 155
                            ********************98566779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-565176IPR003441NAC domain
PROSITE profilePS5100556.84813176IPR003441NAC domain
PfamPF023659.2E-2714155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLAMDQHQEE SCVPPGFRFH PTEEELVGYY LARKVAAQNI DLGIIQEVDL YRTEPWDLQE  60
KCGGGRGGRG TRQVAADEQS SSEWYFFSFK DRKYPSGTRT NRATAAGFWK ATGRDKPVTS  120
SRSRSVIGMR KTLVFYRGRA PNGRKTDWII HEYRLQTSEH GPTQEDGWVV CRAFQKPTPN  180
QRQSYTFPAY ATALGLGRYY DARPCLHGQG GNLHYLHSAA STAGAGGLCF PGQSAQYSSE  240
DTLECKKGIF NNIPQLIQSP PPATAFAGCS EAGYDLVQPK LAATGIDWNF LDILLSTSLL  300
PDSSAASAAS NLQLPLHQPS LIYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-49817610168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184116.11e-172NAC domain-containing protein 30-like
RefseqXP_020184117.11e-172NAC domain-containing protein 30-like
TrEMBLA0A3B6B9W40.0A0A3B6B9W4_WHEAT; Uncharacterized protein
STRINGTraes_2AL_C0670BBDD.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.13e-82vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]