PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_C00552444.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 785aa    MW: 84593.5 Da    PI: 6.0953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_C00552444.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.62.7e-15104155657
                            S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                            ++t+ q++eL+++ +++++p++++r+ L k+++L+ +qVk+WFqNrR++ k+
  Traes_2AL_C00552444.1 104 RHTPRQIHELQAYAHQCPHPDEKQRAALGKRVRLQPSQVKFWFQNRRTQLKR 155
                            689*********************************************9997 PP
2START163.91.2e-512975272203
                            HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT CS
                  START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdet 75 
                            la +a++elvk+a+ +ep+W   +        e +n +++l++f+++ +     + +ea+r+sg+v  +   +lve+lld + +W++ 
  Traes_2AL_C00552444.1 297 LATSAMDELVKMAQMDEPLWIPNVplpgslakETLNHEVYLRTFSPAIGvkppgFVSEASRESGIVSSDGSvELVETLLDER-RWSRF 383
                            7889*****************999999*******************999****************98775448*********.***** PP

                            -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EE CS
                  START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRael 147
                            +     + +t+e is+g      gal lm+a+lq+lsplvp R+++f+R++++lg+g w++vdvS d+  + +      +   +++++
  Traes_2AL_C00552444.1 384 FSciiaESSTIEEISTGaagsrdGALLLMQAKLQVLSPLVPiREVTFLRFCKKLGEGFWAVVDVSMDELVMEQGlavasTTANMKCRR 471
                            **99***************************************************************99988777777788899**** PP

                            SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                  START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203
                            lpSg+++++++ng +kvtwveh+ ++++++h+l+r+l++sgla ga +w+atlqrq
  Traes_2AL_C00552444.1 472 LPSGCVVQDTPNGFCKVTWVEHTVYDESSVHQLYRPLLRSGLALGAGRWLATLQRQ 527
                            ******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-1690156IPR009057Homeodomain-like
SuperFamilySSF466893.51E-1592156IPR009057Homeodomain-like
SMARTSM003891.2E-1395160IPR001356Homeobox domain
PROSITE profilePS5007115.14396156IPR001356Homeobox domain
CDDcd000868.82E-1696157No hitNo description
PfamPF000469.1E-13104155IPR001356Homeobox domain
PROSITE profilePS5084841.192287533IPR002913START domain
SuperFamilySSF559612.61E-25290528No hitNo description
CDDcd088751.25E-100291527No hitNo description
SMARTSM002341.4E-36296530IPR002913START domain
PfamPF018521.7E-44297527IPR002913START domain
SuperFamilySSF559614.12E-13549725No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MPREKGMAFW GFFDGDGDDG GPAPGMNEFP YYAAAGPGAL ASSSLSPPSS LAPGRGFVKV  60
EDGSRSMTDH LHAVSGGDAG GGEDGEAAPE LDHRGKRKRP ANARHTPRQI HELQAYAHQC  120
PHPDEKQRAA LGKRVRLQPS QVKFWFQNRR TQLKRESLLH ENQQLMAENG KLRAENLSLR  180
VAMAHPVCGG CGGPVPAMLD ESPSLEEEDL RVQNATLKNE LSRLCALASV FLGRSISYVA  240
APPTPGSPAE RIGSVPATTV ANSTVTEFTG SPSSQTAGMA ITAMAKAGID RSVFLELATS  300
AMDELVKMAQ MDEPLWIPNV PLPGSLAKET LNHEVYLRTF SPAIGVKPPG FVSEASRESG  360
IVSSDGSVEL VETLLDERRW SRFFSCIIAE SSTIEEISTG AAGSRDGALL LMQAKLQVLS  420
PLVPIREVTF LRFCKKLGEG FWAVVDVSMD ELVMEQGLAV ASTTANMKCR RLPSGCVVQD  480
TPNGFCKVTW VEHTVYDESS VHQLYRPLLR SGLALGAGRW LATLQRQYDC LDVLMPKQDS  540
SDAMLEGSRS LLRLAERMMD NFCAGVSASS AEWSKLEDVT GSIGEDVRIM ACRSVDEPGV  600
PAGVVLCAAT SVWMLVTPKR LFNFLCNERT RAEWDILSKG GPMQEVTKIY KGQQNGNAVS  660
LLKATAPNTQ QDSSILILQE TCTDASSSMV VYTPVDIPAM RRVMGGEGDP ASIMLLPSGF  720
AILPGWPSIS GDDGHKTCGS LLTVAFQILG NRQPTGKLTV ESVQTVDSLI SCTINRIKTA  780
LRRLS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187432.10.0homeobox-leucine zipper protein ROC4-like
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLA0A3B6B3A10.0A0A3B6B3A1_WHEAT; Uncharacterized protein
STRINGTraes_2AL_C00552444.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]