PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_B01AE830F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 158aa MW: 17936.4 Da PI: 10.1513 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6e-16 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv+ +++ Gg+ +W++ ++ g++R++k+c++rw +yl Traes_2AL_B01AE830F.1 15 KGPWTEEEDKTLVEHIQKRGGNvgSWRRLPKAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.8e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ Traes_2AL_B01AE830F.1 70 RGNFTDEEERLIITLHAGLGNK-WATIATHLE-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.706 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.98E-28 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 15 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 16 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.99E-8 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.933 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.51E-11 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MGRSPCCCRD ADVKKGPWTE EEDKTLVEHI QKRGGNVGSW RRLPKAAGLN RCGKSCRLRW 60 TNYLRPDIKR GNFTDEEERL IITLHAGLGN KWATIATHLE GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPPGQSHHH LNATSIAHHP GALLWAAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 10 | 119 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM156904 | 1e-116 | AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene). | |||
GenBank | BT054398 | 1e-116 | BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds. | |||
GenBank | HQ858691 | 1e-116 | HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169252.1 | 1e-106 | transcription factor MYB34-like | ||||
Swissprot | Q9LDR8 | 5e-64 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A3B6B567 | 1e-115 | A0A3B6B567_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AL_B01AE830F.1 | 1e-114 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 9e-70 | myb domain protein 9 |
Publications ? help Back to Top | |||
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