PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2AL_AF9357B4C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 29968.6 Da PI: 6.8526 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.7e-13 | 15 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 +g W++eEd++l d + ++G +W+t++ + + R +k+c++rw +yl Traes_2AL_AF9357B4C.1 15 KGLWSPEEDQKLRDFIVRYGHSCWSTVPVKAAgLQRNGKSCRLRWINYL 63 678********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.4e-16 | 70 | 114 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e +++ lG++ W++Ia++++ gRt++++k++w++yl Traes_2AL_AF9357B4C.1 70 GMFSREEEETVMSLHATLGNK-WSLIAQHLP-GRTDNEVKNYWNSYL 114 56999****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.862 | 10 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 10 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.48E-27 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-10 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-11 | 15 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.347 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 67 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-11 | 72 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VRYGHSCWST VPVKAAGLQR NGKSCRLRWI 60 NYLRPGLKHG MFSREEEETV MSLHATLGNK WSLIAQHLPG RTDNEVKNYW NSYLKKRVEG 120 ARAPAKSAGS DAPRSPTPSE SGRERCTVNQ PSNSGSSGPL ESSSTADESS SLTVPGTAAS 180 IRPHAPVLPK VMFADWLDMD MDYGTGLMAP SALDAAFDGS PAQQGASVST TVDGRCDAVD 240 SLHGIGDGGI CWEFEADMQG GGAGFCDLLS MSEFLGIN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 15 | 119 | 7 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK370513 | 0.0 | AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156819.1 | 1e-176 | transcription factor LAF1-like | ||||
TrEMBL | A0A3B6B274 | 0.0 | A0A3B6B274_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L9J1 | 0.0 | A0A446L9J1_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_AF9357B4C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52260.1 | 4e-60 | myb domain protein 19 |
Publications ? help Back to Top | |||
---|---|---|---|
|