PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_A7EA252CA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 171aa    MW: 18773 Da    PI: 4.5953
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_A7EA252CA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.47.6e-12127102128
                    NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                            ++ktLvfy+grap+g+kt+Wvmhe+rl
  Traes_2AL_A7EA252CA.1   1 MRKTLVFYQGRAPNGSKTSWVMHEFRL 27 
                            89***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023653.0E-4127IPR003441NAC domain
PROSITE profilePS5100521.955146IPR003441NAC domain
SuperFamilySSF1019414.58E-16146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MRKTLVFYQG RAPNGSKTSW VMHEFRLDSP HLPPREDWVL CRVFQKQKVD GEQDNARSSS  60
PTFAGSSQAA QELPVMDASS DQMMGSGSAG FAPPRQEEIF CGPSPLMNAA MWQQYNSLLL  120
DQYPQEETAS VSPTMGIGAR GGAGDECGFF FNSGFEDMAT LGAMRFPQGW S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2484801e-116AK248480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7e16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168520.11e-105protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A446LAI41e-123A0A446LAI4_TRITD; Uncharacterized protein
TrEMBLA0A446LAI81e-123A0A446LAI8_TRITD; Uncharacterized protein
STRINGTraes_2AL_A7EA252CA.11e-124(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-22NAC domain containing protein 74
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]