PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_A7941CB12.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 742aa MW: 83125.8 Da PI: 6.5572 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.6e-23 | 44 | 145 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+ Traes_2AL_A7941CB12.2 44 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 129 99***********************9*****86555544..8********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F ++++ +l+++++r+ Traes_2AL_A7941CB12.2 130 FI--WNEKNQLWLGIRRA 145 **..8999999*****97 PP | |||||||
2 | Auxin_resp | 110.6 | 1.6e-36 | 170 | 253 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPra++seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrW S Wrs+k Traes_2AL_A7941CB12.2 170 AAHAASTNSRFTIFYNPRACPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWASSYWRSVK 253 79*******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-48 | 29 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-40 | 36 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.50E-21 | 43 | 144 | No hit | No description |
Pfam | PF02362 | 1.3E-21 | 44 | 145 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-24 | 44 | 146 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.083 | 44 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.0E-31 | 170 | 253 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.9E-7 | 637 | 730 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 7.85E-7 | 638 | 718 | No hit | No description |
PROSITE profile | PS51745 | 22.709 | 643 | 727 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MHADVETDEV YAQMTLQPLN PQEQNDAYLP AEMGIMSKQP TNYFCKTLTA SDTSTHGGFS 60 VPRRAAERVF PPLDFTQQPP AQELIARDIH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK 120 RLVAGDSVLF IWNEKNQLWL GIRRANRTQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF 180 TIFYNPRACP SEFVIPLSKY IKAVFHTRIS VGMRFRMLFE TEESSVRRYM GTITEVSDAD 240 PVRWASSYWR SVKVGWDEST AGERPPRVSL WEIEPLTTFP MYPSLFPLRV KHPWYSGVAG 300 LQDDSNALMW LRGVAGDGGY QSMNFQSPGI GSWGQQRLHP SLMSTDHDQY QAVVAAAAAA 360 SQSGGYMKQQ FLNLQQPMQS PQEHCNLNPL LQQQILQQAS QQQTVSADSQ NIQTMLNSSA 420 IQHQLQQLQQ LQQVHQVQQA QQAHIDQKQK IQSDQTYHVP TSASLPSPTS LPSHLREKFG 480 FSDPNANSSS FTTSSSSDNM LESNFLQGNS KAVNLSRFNQ PVASDQQQQQ QQQQQQQAWK 540 QKFMGSQSLS FGGSGLLNSP TSKDGSLESK IGSDVQHQSL FSPQVDSSSL LYNMVPNMTS 600 NVADNNMSTI PSGSTYLQSP MYGCLDDSSG IFQNTGENDP TSRTFVKVYK SGSVGRSLDI 660 TRFSNYAELR EELGQMYGIR GQLDDPDRSG WQLVFVDREN DVLLLGDDPW ESFVNSVWYI 720 KILSPEDVHK LGKQGNDPRY LS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-124 | 1 | 274 | 115 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358361 | 0.0 | AK358361.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1074P07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185201.1 | 0.0 | auxin response factor 12 | ||||
Refseq | XP_020185202.1 | 0.0 | auxin response factor 12 | ||||
Swissprot | Q0J951 | 0.0 | ARFL_ORYSJ; Auxin response factor 12 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A3B6B888 | 0.0 | A0A3B6B888_WHEAT; Auxin response factor | ||||
STRING | Traes_2AL_A7941CB12.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |