PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_9E68ABA72.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 745aa    MW: 81855.2 Da    PI: 6.5214
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_9E68ABA72.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.11.8e-3192176187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+++e+laLi++r+em++++r++ lk plWeevs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++f++lea
  Traes_2AL_9E68ABA72.1  92 RWPREETLALIRIRSEMDTTFRDATLKVPLWEEVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFQELEA 176
                            8*********************************************************************866665..******985 PP
2trihelix109.71.9e-34495580187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r +m++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  Traes_2AL_9E68ABA72.1 495 RWPKTEVHALIQLRMDMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 580
                            8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-489151IPR001005SANT/Myb domain
CDDcd122031.03E-2991156No hitNo description
PfamPF138371.1E-2191177No hitNo description
PROSITE profilePS500907.1291149IPR017877Myb-like domain
SMARTSM007170.018492554IPR001005SANT/Myb domain
PROSITE profilePS500907.062494552IPR017877Myb-like domain
CDDcd122033.32E-29494559No hitNo description
PfamPF138373.8E-22494581No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MQQHQHQGDA SQYGAPPQPA DMGPFSAQQA PAPVPLSVRP PPTQHQQQQN PQPSYDELAG  60
ASGAGASGFP DDDMLGDSGG HSGGGLGSGG NRWPREETLA LIRIRSEMDT TFRDATLKVP  120
LWEEVSRKLA ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF FQELEALHAA  180
TAAAQHHQQH QEQLPLVVSA APPPQMHAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXQ  240
PPPVSLQGLS FPCMSDSESD DDDDSEDDDM TAETGGSPDG LGKRKRGGGG SKKMMAFFEG  300
LMKQVVQRQE EMQQRFLETM EKREAERTAR EEAWRRQEVA RLNREQEQLA QERAAAASRD  360
ASIIAFLQRI GGQAVHVPPV VIPMPTPMQV QTSPPPKKPR QHLPPPPPSQ ATQQPQPQPQ  420
PQPQPIPAAP LQQQPPSQPP HKETTREEAG TPRSAPAPTS AGLSLALVPV ATEQHVVEAA  480
GLGGGESVGG PSSSRWPKTE VHALIQLRMD MDNRYQENGP KGPLWEEISA GMRRLGYSRN  540
SKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLEA IYRKKHNGGG SSGAAANNAV  600
VPVPAVAEHQ NLNRHEIEIE GKKINDTDKR NNGGVGAAQV PTSNGQTTPP TATFDLGVKK  660
PEDAVRELNE QPHREFTTDE TDSDDMGDDY TDDGEDGEDD GKMQYRIQFQ RPNPVGTNNA  720
PPSPTTAATA APTSTPASSF LAMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142KRSAKKCKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589110.0AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200393.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A3B6B1X60.0A0A3B6B1X6_WHEAT; Uncharacterized protein
TrEMBLA0A446LB340.0A0A446LB34_TRITD; Uncharacterized protein
STRINGTraes_2AL_9E68ABA72.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-48Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]