PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_962A9D448.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 26123.1 Da PI: 8.5852 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G +W+t++ + g+ R +k+c++rw +yl Traes_2AL_962A9D448.1 15 KGLWSPEEDQKLRDYIVRYGHSCWSTVPVKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e +++ lG++ W+ Ia++++ gRt++++k++w++yl Traes_2AL_962A9D448.1 69 GMFSREEEETVMSLHATLGNK-WSQIAQHLP-GRTDNEVKNYWNSYL 113 56999****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 10 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.283 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.52E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.254 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 66 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.49E-12 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGCKSCQKPK AQHRKGLWSP EEDQKLRDYI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN 60 YLRPGLKHGM FSREEEETVM SLHATLGNKW SQIAQHLPGR TDNEVKNYWN SYLKKRVEGA 120 RAPAKSAGSD APRSPTPSDS GRERSTVNQP SNSGSSGPPE SSSTADDSSS LTGPGAAGSI 180 RPHAPVLPKV MFADWLDMDM DYGAGLMAPS ALDAAFDCSP AQQGASGSTT VDGLCGAVDS 240 LQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 15 | 118 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370513 | 0.0 | AK370513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111O05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156819.1 | 1e-154 | transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 1e-60 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A3B6B174 | 1e-179 | A0A3B6B174_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L9H8 | 1e-179 | A0A446L9H8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_962A9D448.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 5e-62 | myb domain protein 19 |
Publications ? help Back to Top | |||
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