PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_92939B028.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 401aa    MW: 42997.4 Da    PI: 8.4883
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_92939B028.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.4e-32278333156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Traes_2AL_92939B028.1 278 KARRCWSPELHRQFVTALHQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 333
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.514275335IPR017930Myb domain
SuperFamilySSF466896.45E-17276336IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-29276336IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25278333IPR006447Myb domain, plants
PfamPF002491.7E-7280331IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MLLLLYISVP IHPPPPSSSH PPHTFSCNKS VKDSVCRASE SSGVKSMGLD VGEIGMGADL  60
SLDLKMFAAK SLGRVREAPA AAMDDCIRRL EEEKSKIEVF RRELPLCARL LADVIDVMKK  120
EVEEKKRGGD RGEDKEDAGA GDKSNWMSTA QLWTGDSVRG DDASEKQDAR RRSSEPESHD  180
GAALPFKAVG SGAPAFAPPS LRKDDKAVRM PDLPFLSPAP TKTSPAAATG GAEESRRQLV  240
GFAQEAARAA AALAPAAPSL GLQAQSQQTA QQQQQARKAR RCWSPELHRQ FVTALHQLGG  300
PQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHNRRAPGS PAANRPIVLM GGLWITQDQS  360
SSQSGGSPPG PLHFSSSGVA ASSVTVSGEE EDGRSESYGW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-14278336260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-14278336260Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-14278331154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-14278331154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-14278331154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-14278331154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-14278336260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-14278336260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-14278336260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-14278336260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-14278336260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-14278336260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519320.0JF951932.1 Triticum aestivum clone TaMYB49 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173713.10.0myb family transcription factor EFM-like
TrEMBLA0A446L0I30.0A0A446L0I3_TRITD; Uncharacterized protein
STRINGTraes_2AL_92939B028.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-33G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]