PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_8E714CD46.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 411aa    MW: 43126.2 Da    PI: 6.5144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_8E714CD46.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10270317455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P++    +k   Ka +L + ++Y++sLq
  Traes_2AL_8E714CD46.1 270 SHSLAERVRREKIGERMKLLQSLVPSC----NKITGKALMLDEIINYVQSLQ 317
                            8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.48E-10264321No hitNo description
SuperFamilySSF474591.7E-16264334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16266337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7270317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MANEHFFPGE YLSSGLAAPF LGASYVQPPR SGFEAAAAMA FGLPWVDQHL PVDSSATTAH  60
FDSALSSLVS SPASATAGGG LGFTHGGEDD VAIGDLIGRL GSICNGASAN NSCYSTPISS  120
PPRGAPQAFR GYGAIAALET GRLSRVSSSK SLVGNTSGVA ATAPLDQNAQ LEMSPETDSQ  180
PAMQEPPTKK GAAGSARKRK AAPAKGKAKA SLPAVQPSCS MAAMNTSPPK RPRVADGGDE  240
ENAGAVEEEK AEPAKDYIHV RARRGQATDS HSLAERVRRE KIGERMKLLQ SLVPSCNKIT  300
GKALMLDEII NYVQSLQRQV EFLSMKLSTM NPQLELDEQY IPSKEGDNLA HNYFQMNQMA  360
VPGFSYAGSP VAVAAGHGHG AEVEGTFSWE QDLQRVVQMG GASSSHSQQP Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618140.0AK361814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1150A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162177.10.0transcription factor bHLH62-like isoform X2
TrEMBLA0A3B6AYB80.0A0A3B6AYB8_WHEAT; Uncharacterized protein
TrEMBLA0A446L1V40.0A0A446L1V4_TRITD; Uncharacterized protein
STRINGTraes_2AL_8E714CD46.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-52bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]