PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_8D3A3687D.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 279aa    MW: 30627.5 Da    PI: 6.6371
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_8D3A3687D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1054.5e-333791155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           k+rlrWtp+LH+rFv+av++LGG++kAtPk++l+lm +kgLtl+h+kSHLQkYRl
  Traes_2AL_8D3A3687D.2 37 KQRLRWTPDLHDRFVHAVARLGGPDKATPKAVLRLMAMKGLTLYHLKSHLQKYRL 91
                           79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-313492IPR009057Homeodomain-like
PROSITE profilePS5129412.0593494IPR017930Myb domain
TIGRFAMsTIGR015573.5E-243792IPR006447Myb domain, plants
SuperFamilySSF466897.17E-163791IPR009057Homeodomain-like
PfamPF002492.9E-83990IPR001005SANT/Myb domain
PfamPF143791.4E-19131177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MFEGMEGMSY GGGGGAGAGA GAGAGAGAAA LSSRDPKQRL RWTPDLHDRF VHAVARLGGP  60
DKATPKAVLR LMAMKGLTLY HLKSHLQKYR LGKHTKKSTD LELANNGEFT SQDISFQIGA  120
PLAGRDTARE MPLEDTLRYQ IQVQRELCEQ LEVQKKLQMR IEAQGRYLKE ILEKAQENIS  180
FDANGSAGLE NTGSQLTDFN LALPGLSENG TQVYEESSEQ LVKHMSDDNL HDNNLDFQLY  240
RVRSQEAKSV KCTPKTEDLL LLDLNIKGGY DLSSRGMQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-203794158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3715120.0AK371512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2136B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164352.11e-175myb family transcription factor PHL11-like
TrEMBLA0A3B6B4Z90.0A0A3B6B4Z9_WHEAT; Uncharacterized protein
STRINGTraes_2AL_8D3A3687D.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.16e-60G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]