PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_8D3A3687D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 279aa MW: 30627.5 Da PI: 6.6371 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105 | 4.5e-33 | 37 | 91 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp+LH+rFv+av++LGG++kAtPk++l+lm +kgLtl+h+kSHLQkYRl Traes_2AL_8D3A3687D.2 37 KQRLRWTPDLHDRFVHAVARLGGPDKATPKAVLRLMAMKGLTLYHLKSHLQKYRL 91 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-31 | 34 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.059 | 34 | 94 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.5E-24 | 37 | 92 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.17E-16 | 37 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-8 | 39 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-19 | 131 | 177 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MFEGMEGMSY GGGGGAGAGA GAGAGAGAAA LSSRDPKQRL RWTPDLHDRF VHAVARLGGP 60 DKATPKAVLR LMAMKGLTLY HLKSHLQKYR LGKHTKKSTD LELANNGEFT SQDISFQIGA 120 PLAGRDTARE MPLEDTLRYQ IQVQRELCEQ LEVQKKLQMR IEAQGRYLKE ILEKAQENIS 180 FDANGSAGLE NTGSQLTDFN LALPGLSENG TQVYEESSEQ LVKHMSDDNL HDNNLDFQLY 240 RVRSQEAKSV KCTPKTEDLL LLDLNIKGGY DLSSRGMQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 37 | 94 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371512 | 0.0 | AK371512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2136B23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164352.1 | 1e-175 | myb family transcription factor PHL11-like | ||||
TrEMBL | A0A3B6B4Z9 | 0.0 | A0A3B6B4Z9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2AL_8D3A3687D.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 6e-60 | G2-like family protein |
Publications ? help Back to Top | |||
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