PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_8417C5F8B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 244aa MW: 26660.8 Da PI: 6.343 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9.1e-10 | 37 | 78 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT E +ll+++v ++G + W++I +++ ++ +c+ r+ + Traes_2AL_8417C5F8B.1 37 AWTDAETLLLLEGVLKHGDD-WDLITQHVR-TKNKTECIARLIQ 78 8*****************88.*********.888888*999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.01E-9 | 31 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 19.27 | 33 | 84 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-6 | 34 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-6 | 35 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.19E-7 | 37 | 75 | No hit | No description |
Pfam | PF00249 | 7.9E-9 | 37 | 78 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
GFKVCSTCCK TNSAKKEEAN KCSIVKKESS DNHASSAWTD AETLLLLEGV LKHGDDWDLI 60 TQHVRTKNKT ECIARLIQLP FGEHMLGNIN NGKSDSRFHT NQTTDGKTNH FIVKEASSQS 120 ADMVDGMQID GEEDGADKLV EDHPSKRRRL CSSIDVTSSL MEQLALLTTA VSPDVVAAAA 180 AASIKALGNE NPQAKKAFHL SEKEYQVKSF SSNHVQESDC NVGNKEAEMH GQTVPGRPNF 240 LLTF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 149 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155759.1 | 1e-159 | SWI/SNF complex subunit SWI3A-like | ||||
TrEMBL | A0A3B6C8J8 | 1e-163 | A0A3B6C8J8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MG16 | 1e-163 | A0A446MG16_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453C7P5 | 1e-164 | A0A453C7P5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2AL_8417C5F8B.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2894 | 3 | 4 |
Publications ? help Back to Top | |||
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