PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_7E3EE8C87.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 475aa MW: 51411.6 Da PI: 6.2004 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 2.1e-11 | 133 | 189 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Traes_2AL_7E3EE8C87.2 133 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 189 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 48.2 | 2.7e-15 | 232 | 283 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Traes_2AL_7E3EE8C87.2 232 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 283 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-9 | 133 | 189 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.04E-18 | 133 | 199 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-14 | 133 | 198 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.504 | 134 | 197 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-12 | 134 | 198 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-22 | 134 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-6 | 135 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-10 | 232 | 283 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.95E-23 | 232 | 292 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-18 | 232 | 292 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-18 | 233 | 291 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-33 | 233 | 297 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.348 | 233 | 291 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-6 | 273 | 293 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MDMDAAHGHY PWLNFSLAHH CEMEEEERGA AAELAAIAGA GPPPKLEDFL GGGANGRNNN 60 DAGRGDQVVS AATAEMYDSE LKFLAAGFLS GASGTTAPTI SPAAAPQEQA DPKMTAPTPE 120 QKKAVDSFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEEKAARAY 180 DLAALKYWGS STTTNFPVAD YEKEVEEMKH MTRQEFVASL RRKSSGFSRG ASIYRGVTRH 240 HQHGRWQARI GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EIGRYNVESI 300 ISSNLPIGNM SGGAGRGSKA LESSSPEAAP LPVEAPHSLA FTALPMKYDQ QQQDYLSFLA 360 LQHHQQGNLQ GLGYGLYSSG VNLDFANAGP GGAMAPHCYG SNGVDLHLQQ HDHQQEQEGE 420 GQQQQHDQHQ SMGFGASTPM AAFSSGGPYE SSVTAGSFGY YPNVAAFQTP IFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365365 | 0.0 | AK365365.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033L15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186522.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-132 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A446MT42 | 0.0 | A0A446MT42_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_7E3EE8C87.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-122 | AINTEGUMENTA-like 5 |