PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_7ABA7B7C8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 613aa    MW: 63998 Da    PI: 8.5695
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_7ABA7B7C8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0599121123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C+k F r  nL+ H r H
  Traes_2AL_7ABA7B7C8.1  99 FVCEVCNKGFQREQNLQLHRRGH 121
                            89*******************88 PP
2zf-C2H211.50.0009176198123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k++  +s+ k H + +
  Traes_2AL_7ABA7B7C8.1 176 WKCDKCSKRYAVQSDWKAHSKIC 198
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-798121No hitNo description
Gene3DG3DSA:3.30.160.608.5E-698121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09499121IPR007087Zinc finger, C2H2
PfamPF121714.0E-599121IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004199121IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4164197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-7171196No hitNo description
SMARTSM00355140176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGMRDGD QQDQMKPLIS QQQQQHHHHH QQHQLAAVAL SGAGSAAPAA  60
SSQGAPAAAP PAKKKRTLPD PDAEVIALSP KTLMATNRFV CEVCNKGFQR EQNLQLHRRG  120
HNLPWKLKQK NPNQVQRRRV YLCPEPTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK  180
CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRRDSFITH RAFCDALAQE SARLPPTSLS  240
SLTSHLYGAT NAGNMALSLS QVGSHLNSTL QHDGHHHHPS PELLRLGGAA GGGSSSIAAR  300
LDHLLSPSGA SAFRPPQQQP QSAFFLNAAP GQDFGDEAGN GSHSYLQSKP FHGLMQLPDL  360
QGNGAGGPAS SGHGLFNLGF FSNNGNSSGS SHEHASQGMM SNDQFSGGAG GGGSEVSAAA  420
IFGGNFVGGD HISQAGMYND QAPMLPQMSA TALLQKAAQM GATSSPNGAA SMFRGFVGSS  480
PHGRQGTPQQ QMDQNDANLN ELMNSLAAGG GVNAAAMFGG ANGGPAGMFD PRMCDMDQHE  540
VKFSQGGGGV GGNGGGAGGG GGDMTRDFLG VGGGGIVRGI STPRGDHHQS SSDMSSLEAE  600
MKSASSFNGG RMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34172238369Zinc finger protein JACKDAW
5b3h_F4e-34172238369Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743080.0AK374308.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3060C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197691.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197692.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_020197693.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A3B6B2E30.0A0A3B6B2E3_WHEAT; Uncharacterized protein
STRINGTraes_2AL_7ABA7B7C8.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]