PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_7181302A3.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 337aa MW: 38627.9 Da PI: 10.6688 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.1 | 4.8e-06 | 282 | 302 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e Cr++++ C++ ++C+FaH+ Traes_2AL_7181302A3.3 282 EVCRDYLK-KMCNR-ESCRFAHP 302 89******.*****.*******9 PP | |||||||
2 | zf-CCCH | 20.3 | 1e-06 | 312 | 334 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k e Cr+f r G+C + ++C+F H+ Traes_2AL_7181302A3.3 312 KVEVCRDFKR-GECTR-PTCRFYHP 334 89********.*****.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.282 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 97 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.063 | 102 | 122 | No hit | No description |
SMART | SM00356 | 0.21 | 131 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.836 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 3.4 | 143 | 156 | No hit | No description |
PROSITE profile | PS50103 | 12.774 | 173 | 201 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0085 | 174 | 200 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 3.1 | 179 | 198 | No hit | No description |
SMART | SM00356 | 7.8 | 203 | 228 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.911 | 203 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.774 | 278 | 304 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0088 | 279 | 303 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.0097 | 284 | 302 | No hit | No description |
SMART | SM00356 | 0.011 | 310 | 335 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.929 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 312 | 334 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MASAEIPNAD TAEPNPSPNP AARSPSPPLP PRKRRLSLSP SRSASPRRSV SRSRSPRDRR 60 SRSRSRSRSR SRSRSRSRSR SRSPRQPEGK RRRQNDLTVE ACRDYLRDRC TRSDLECKYA 120 HPHQSVSVDR DSKVTACADS LRNNCFRGRT CRYYHPPPHI QESLLRSIGL DVPQVKTVCR 180 DFARGRCSRS ANECRFLHHS SVQECAIVCQ DFLRGRCERI SCRYTHVIAQ PMLPPPMRDV 240 PMQMPYPEMV YMPPPPPPLG VPMMAPPLSP PRGFADNKNT VEVCRDYLKK MCNRESCRFA 300 HPDSQTEVAH DKVEVCRDFK RGECTRPTCR FYHPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5u6h_A | 1e-14 | 97 | 164 | 14 | 79 | Muscleblind-like protein 1 |
5u9b_A | 1e-14 | 97 | 164 | 14 | 79 | Muscleblind-like protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 81 | RSRSRSRSRSR |
2 | 73 | 81 | RSRSRSRSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369186 | 0.0 | AK369186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086G01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165259.1 | 1e-173 | zinc finger CCCH domain-containing protein 28-like | ||||
Swissprot | Q0JD07 | 1e-136 | C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28 | ||||
TrEMBL | A0A3B6B000 | 0.0 | A0A3B6B000_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L4S0 | 0.0 | A0A446L4S0_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_7181302A3.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10904 | 19 | 22 |
Publications ? help Back to Top | |||
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