PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_70AE1B8B8.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 435aa MW: 45900.3 Da PI: 8.0587

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_70AE1B8B8.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.2e-05	320	357	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Traes_2AL_70AE1B8B8.1 320 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 357 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.227	308	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.03E-10	318	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-7	318	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.35E-5	318	360	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MGDHQLMYAA PAMHNGGGGG AVSHGMWWNT NTTAVPAAAC STELAGFNTW PAAQLAAGGY 60 DMAVADGGKA KSCTTTASSE SPGNNSSVTF QETASISDPA AGFTDWNSPY MSNGGAGNMH 120 GFLQVGHHDM SSRTDQQSHM NASSMLNDPS ANKLDLALQG HQQAGDHHRQ QKLLSSLGAP 180 ELLLSPNSPY GFQSSSLLRS LLEPMAKPAP AAGIQQYQYQ QMGGQAGVRE PLQFTNDAAF 240 WNPSAGFGMA MPAPAVSEQT SVRAVKRPSP APRGANLALK SVLEGVGDSS SIVTKKANSE 300 PAFKKPRTET PSSLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHDQ 360 AGVLSAPYLK RGHHQHQVPQ YLKSSSASPD KSCKDGSGEV SLKGRGLCLV PISSTFAVAS 420 DGPVDFWTPF GGQFR

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MGDHQLMYAA PAMHNGGGGG AVSHGMWWNT NTTAVPAAAC STELAGFNTW PAAQLAAGGY  60
DMAVADGGKA KSCTTTASSE SPGNNSSVTF QETASISDPA AGFTDWNSPY MSNGGAGNMH  120
GFLQVGHHDM SSRTDQQSHM NASSMLNDPS ANKLDLALQG HQQAGDHHRQ QKLLSSLGAP  180
ELLLSPNSPY GFQSSSLLRS LLEPMAKPAP AAGIQQYQYQ QMGGQAGVRE PLQFTNDAAF  240
WNPSAGFGMA MPAPAVSEQT SVRAVKRPSP APRGANLALK SVLEGVGDSS SIVTKKANSE  300
PAFKKPRTET PSSLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHDQ  360
AGVLSAPYLK RGHHQHQVPQ YLKSSSASPD KSCKDGSGEV SLKGRGLCLV PISSTFAVAS  420
DGPVDFWTPF GGQFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK369505	0.0	AK369505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092J07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190605.1	0.0	transcription factor bHLH112-like isoform X1
TrEMBL	A0A3B6B5Q0	0.0	A0A3B6B5Q0_WHEAT; Uncharacterized protein
STRING	Traes_2AL_70AE1B8B8.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	1e-45	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]