PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_6FC5F1FD0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 467aa    MW: 51993.1 Da    PI: 5.0385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_6FC5F1FD0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10266312354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +a+ + Er RR+++N ++ +Lr l P++     +K++ a+++  A+eYI +L
  Traes_2AL_6FC5F1FD0.1 266 KANFATERERREQLNVKYKTLRMLFPNP-----TKNDRASVVGDAIEYIDEL 312
                            68899***********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.16263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-11266328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-8266312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-7269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-9270321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-7272317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MIVGGDYFEG SHDHNLMTGS LTHDSSLAPK CNDNTNIELQ RFKVQSFSAD ILSDSTNLSS  60
EAARAINHLQ HQLGIGLEQD MRPVETATWD TSICTIQDQI INHQLSEDPQ NILVQQQIQQ  120
YDAALYPNSG YTPAPDLLNL LHCTVAPVFP PTASVFGDTA LSGGTNYLDL NDEFTGVAAI  180
PDSGLMYTSD PALQLGYHAA QSHALKDICH SLPQNYGLFP SEDERDAILG VGSVGGDLFQ  240
DMDDRQFDTV LEGRRGKGDF GKGKGKANFA TERERREQLN VKYKTLRMLF PNPTKNDRAS  300
VVGDAIEYID ELNRTVKELK ILVEQKWHGT NRRKIRKLDE EAAADGESSS MRPIRDEQDN  360
QLDGAIRSSW VQRRSRECHV DVRIVENEIN IKLTEKKTTN SSLLHVAKVL DEFHLEIIHV  420
VGGIIGDHYI FMFNTKVSEG SSIYACAVAK RILQAVDAQH QALDIFN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152149.10.0transcription factor EAT1-like
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A3B6B4R00.0A0A3B6B4R0_WHEAT; Uncharacterized protein
STRINGTraes_2AL_6FC5F1FD0.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.13e-44bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]