PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_6E76DBE34.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 537aa    MW: 56981.6 Da    PI: 6.7285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_6E76DBE34.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.6e-054224591254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Traes_2AL_6E76DBE34.1 422 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 459
                            677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.017410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-8420468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-5420463No hitNo description
SuperFamilySSF474594.84E-11420478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
SVAPDRFEIY QLTQCGKTAN DPSHGQAGEI LLSVSFPNAV YIYPDHTTPS FPLSLASPLS  60
PPSSPCPPNK HSPLPCIWLS YPSEIDRSTK KRSGDQQIEE MGDHQLMHAA PAMYSGGGAG  120
AVSHGMWWNS NATAGVPAAA CSTELAGFNS WPAGLAAGGY DVAGVDGGKQ AKSCTTTASS  180
ESPGNNSSIT FQETASINDP AAAGFADWNN PYMSSGAGNM HGFLQVGHHD MSSRTDPQSM  240
MNAVAAPNNL DLALQGHHHH QQQQQQDDHQ RQQQLLSSLG APELLLSPNS PYGFQSSLLR  300
SLIEPTGKPA PAAGLLQQYQ YQQMGGQTGA SEPLQFTNDA AFWNQSAGFG MGMAAPPATD  360
NTSVRLAKQP APAPRGANLA LKTVLEGVGD SSSIVTKKAS GEPAFKKPRM ETPSPLPTFK  420
VRKEKLGDRI TALQQLVSPF GKTDTASVLH ETIEYIKFLH DQVGVLSAPY LKSGHHQHQV  480
PQYLKSSSNG SPDKSCKDGG EVSLKGRGLC LVPISSTFAV ASDVPVDFWN PFGPQFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643030.0AK364303.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168093.10.0transcription factor bHLH112-like
TrEMBLA0A3B6B7W30.0A0A3B6B7W3_WHEAT; Uncharacterized protein
STRINGTraes_2AL_6E76DBE34.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-44bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]