PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_660616C44.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 418aa MW: 45234.3 Da PI: 7.5484 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++l+++a +++G W++I +++g ++t+ q++s+ qk+ Traes_2AL_660616C44.1 39 REKWTEEEHKLFLEAMQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 83 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.023 | 34 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.5E-15 | 34 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-15 | 37 | 86 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.9E-13 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 39 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-10 | 39 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.83E-10 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MARFQETKPD LLNSGSDTRM MAEARAPKAR KPYMITKQRE KWTEEEHKLF LEAMQLHGRA 60 WRRIQEHIGT KTAVQIRSHA QKFFSKVTRD SSGDSGGSSS GGAGPPIQIP PPRPKRKSVH 120 PYPCNQRSAQ PGKHAHAALL RVDKPQLSMC EQGNGSPTSV VTTSQIGLGG SESFDSDTST 180 IDVEERCPTP STGTAEVAVL APPTNDSKKS KGSSGTSEEV VCDNTSDAPV LKLFGKTVVV 240 NESHQLPNPG TCNLQTAADM ELDTSAETPT SAPEANTWSP WLANSQQFMY YVPQGAVFFG 300 YNNGSVPYPV SSSPKADQQH QQHASEAAAE LRRREASSNT ASSSVAETTA RNSAESCTGA 360 VGGDDEMVHA AGLRERVSPA FVQQRGFMPY KRCAAESKAM QPQAPREEAD REMTRLCL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355006 | 0.0 | AK355006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1014J06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193476.1 | 0.0 | protein REVEILLE 7-like | ||||
TrEMBL | A0A3B6B4T6 | 0.0 | A0A3B6B4T6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LG05 | 0.0 | A0A446LG05_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_660616C44.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 8e-34 | MYB_related family protein |
Publications ? help Back to Top | |||
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